Model update (#5)
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Change from minimap2 to winnowmap
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winnowmap performs better in repeat regions as shown in the paper https://doi.org/10.1093/bioinformatics/btaa435
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Add new error catch
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Add script to check if magnipore positions are within annotated regions
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add (0-based) information to readmes
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changed default parameters for winnowmap
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fixed bug that doubled the read counts
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minor bug fixes
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fix tests
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remove settings force_rebuild to true if segmentation is not done
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Update test according to new default mapping parameters
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add file paths to output