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docs: make installation more clear
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gabriellovate authored Nov 15, 2023
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Expand Up @@ -15,6 +15,10 @@ The pipeline is written in Nextflow, which can be used on any POSIX compatible s
1. Install [Nextflow](https://www.nextflow.io/docs/latest/getstarted.html#installation)
2. Install [miniconda](https://docs.conda.io/projects/miniconda/en/latest/)
3. Install [apptainer](https://apptainer.org/docs/admin/main/installation.html#install-unprivileged-from-pre-built-binaries) (from our experience, installing from the pre-built binaries is the easiest way to go)
4. With nextflow installed, you only have to run the pipeline, if you would like to cache the pipeline without running it you can use the following command:
```bash
nextflow pull gabriellovate/RNAswarm
```

In the future, only either conda or apptainer will be needed.

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