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0.18.0: Exploiting column chunks for faster ingestion and lower memory use

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@rerun-bot rerun-bot released this 16 Aug 10:06
· 362 commits to main since this release

Rerun is an easy-to-use visualization toolbox for multimodal and temporal data.
Try it live at https://rerun.io/viewer.

📖 Release blogpost: http://rerun.io/blog/column-chunks
🧳 Migration guide: http://rerun.io/docs/reference/migration/migration-0-18

0.18.Release.hero.mp4

✨ Overview & highlights

Rerun 0.18 introduces new column-oriented APIs and internal storage datastructures (Chunk & ChunkStore) that can both simplify logging code as well as improve ingestion speeds and memory overhead by a couple orders of magnitude in many cases (timeseries-heavy workloads in particular).

These improvements come in 3 broad categories:

  • a new send family of APIs, available in all 3 SDKs (Python, C++, Rust),
  • a new, configurable background compaction mechanism in the datastore,
  • new CLI tools to filter, prune and compact RRD files.

Furthermore, we started cleaning up our data schema, leading to various changes in the way represent transforms & images.

New send APIs

Unlike the regular row-oriented log APIs, the new send APIs let you submit data in a columnar form, even if the data extends over multiple timestamps.

This can both greatly simplify logging code and drastically improve performance for some workloads, in particular timeseries, although we have already seen it used for other purposes!

API documentation:

API usage examples:

Python timeseries

Using log() (slow, memory inefficient):

rr.init("rerun_example_scalar", spawn=True)

for step in range(0, 64):
    rr.set_time_sequence("step", step)
    rr.log("scalar", rr.Scalar(math.sin(step / 10.0)))

Using send() (fast, memory efficient):

rr.init("rerun_example_send_columns", spawn=True)

rr.send_columns(
    "scalars",
    times=[rr.TimeSequenceColumn("step", np.arange(0, 64))],
    components=[rr.components.ScalarBatch(np.sin(times / 10.0))],
)
C++ timeseries

Using log() (slow, memory inefficient):

const auto rec = rerun::RecordingStream("rerun_example_scalar");
rec.spawn().exit_on_failure();

for (int step = 0; step < 64; ++step) {
    rec.set_time_sequence("step", step);
    rec.log("scalar", rerun::Scalar(std::sin(static_cast<double>(step) / 10.0)));
}

Using send() (fast, memory efficient):

const auto rec = rerun::RecordingStream("rerun_example_send_columns");
rec.spawn().exit_on_failure();

std::vector<double> scalar_data(64);
for (size_t i = 0; i < 64; ++i) {
    scalar_data[i] = sin(static_cast<double>(i) / 10.0);
}
std::vector<int64_t> times(64);
std::iota(times.begin(), times.end(), 0);

auto time_column = rerun::TimeColumn::from_sequence_points("step", std::move(times));
auto scalar_data_collection =
    rerun::Collection<rerun::components::Scalar>(std::move(scalar_data));

rec.send_columns("scalars", time_column, scalar_data_collection);
Rust timeseries

Using log() (slow, memory inefficient):

let rec = rerun::RecordingStreamBuilder::new("rerun_example_scalar").spawn()?;

for step in 0..64 {
    rec.set_time_sequence("step", step);
    rec.log("scalar", &rerun::Scalar::new((step as f64 / 10.0).sin()))?;
}

Using send() (fast, memory efficient):

let rec = rerun::RecordingStreamBuilder::new("rerun_example_send_columns").spawn()?;

let timeline_values = (0..64).collect::<Vec<_>>();
let scalar_data: Vec<f64> = timeline_values
    .iter()
    .map(|step| (*step as f64 / 10.0).sin())
    .collect();

let timeline_values = TimeColumn::new_sequence("step", timeline_values);
let scalar_data: Vec<Scalar> = scalar_data.into_iter().map(Into::into).collect();

rec.send_columns("scalars", [timeline_values], [&scalar_data as _])?;

Background compaction

The Rerun datastore now continuously compacts data as it comes in, in order find a sweet spot between ingestion speed, query performance and memory overhead.

This is very similar to, and has many parallels with, the micro-batching mechanism running on the SDK side.

You can read more about this in the dedicated documentation entry.

Post-processing of RRD files

To help improve efficiency for completed recordings, Rerun 0.18 introduces some new commands for working with rrd files.

Multiple files can be merged, whole entity paths can be dropped, and chunks can be compacted.

You can read more about it in the new CLI reference manual, but to give a sense of how it works the below example merges all recordings in a folder and runs chunk compaction using the max-rows and max-bytes settings:

rerun rrd compact --max-rows 4096 --max-bytes=1048576 /my/recordings/*.rrd > output.rrd

Overhauled 3D transforms & instancing

As part of improving our arrow schema and in preparation for reading data back in the SDK, we've split up transforms into several parts.
This makes it much more performant to log large number of transforms as it allows updating only the parts you're interested in, e.g. logging a translation is now as lightweight as logging a single position.

There are now additionally InstancePoses3D which allow you to do two things:

  • all 3D entities: apply a transform to the entity without affecting its children
  • Mesh3D/Asset3D/Boxes3D/Ellipsoids3D: instantiate objects several times with different poses, known as "instancing"
    • Support for instancing of other archetypes is coming in the future!

instancing in action
All four tetrahedron meshes on this screen share the same vertices and are instanced using an InstancePoses3D archetype with 4 different translations

⚠️ Breaking changes

  • .rrd files from older versions won't load correctly in Rerun 0.18
  • mesh_material: Material has been renamed to albedo_factor: AlbedoFactor #6841
  • Transform3D is no longer a single component but split into its constituent parts. From this follow various smaller API changes
  • Python: NV12/YUY2 are now logged with Image
  • ImageEncoded is deprecated and replaced with EncodedImage (JPEG, PNG, …) and Image (NV12, YUY2, …)
  • DepthImage and SegmentationImage are no longer encoded as a tensors, and expects its shape in [width, height] order

🧳 Migration guide: http://rerun.io/docs/reference/migration/migration-0-18

🔎 Details

🪵 Log API

  • Add Ellipsoids3D archetype #6853 (thanks @kpreid!)
  • Dont forward datatype extensions beyond the FFI barrier #6777
  • All components are now consistently implemented by a datatype #6823
  • Add new archetypes.ImageEncoded with PNG and JPEG support #6874
  • New transform components: Translation3D & TransformMat3x3 #6866
  • Add Scale3D component #6892
  • Angle datatype stores now only radians #6916
  • New DepthImage archetype #6915
  • Port SegmentationImage to the new image archetype style #6928
  • Add components for RotationAxisAngle and RotationQuat #6929
  • Introduce TransformRelation component #6944
  • New LeafTransform3D, replacing OutOfTreeTransform3D #7015
  • Remove Scale3D/Transform3D/TranslationRotationScale3D datatypes, remove Transform3D component #7000
  • Rewrite Image archetype #6942
  • Use LeafTranslation (centers), LeafRotationQuat and LeafRotationAxisAngle directly on Boxes3D/Ellipsoids3D #7029
  • Removed now unused Rotation3D component & datatype #7030
  • Introduce new ImageFormat component #7083

🌊 C++ API

  • Fix resetting time destroying recording stream #6914
  • Improve usability of rerun::Collection by providing free functions for borrow & take_ownership #7055
  • Fix crash on shutdown when using global recording stream variables in C++ #7063
  • C++ API for send_columns #7103
  • Add numeric SDK version macros to C/C++ #7127

🐍 Python API

  • New temporal batch APIs #6587
  • Python SDK: Rename ImageEncoded to ImageEncodedHelper #6882
  • Introduce ImageChromaDownsampled #6883
  • Allow logging batches of quaternions from numpy arrays #7038
  • Add __version__ and __version_info__ to rerun package #7104
  • Restore support for the legacy notebook mechanism from 0.16 #7122

🦀 Rust API

  • Recommend install rerun-cli with --locked #6868
  • Remove TensorBuffer::JPEG, DecodedTensor, TensorDecodeCache #6884

🪳Bug Fixes

  • Respect 0.0 for start and end boundaries of scalar axis #6887 (thanks @amidabucu!)
  • Fix text log/document view icons #6855
  • Fix outdated use of view coordinates in Spaces and Transforms doc page #6955
  • Fix zero length transform axis having an effect bounding box used for heuristics etc #6967
  • Disambiguate plot labels with multiple entities ending with the same part #7140
  • rerun rrd compact: always put blueprints at the start of the recordings #6998
  • Fix 2D objects in 3D affecting bounding box and thus causing flickering of automatic pinhole plane distance #7176
  • Fix a UI issue where a visualiser would have both an override and default set for some component #7206

🌁 Viewer improvements

  • Add cyan to yellow colormap #7001 (thanks @rasmusgo!)
  • Add optional solid/filled (triangle mesh) rendering to Boxes3D and Ellipsoids #6953 (thanks @kpreid!)
  • Improve bounding box based heuristics #6791
  • Time panel chunkification #6934
  • Integrate new data APIs with EntityDb/UI/Blueprint things #6994
  • Chunkified text-log view with multi-timeline display #7027
  • Make the recordings panel resizable #7180

🚀 Performance improvements

  • Optimize large point clouds #6767
  • Optimize data clamping in spatial view #6870
  • Add --blueprint to plot_dashboard_stress #6996
  • Add Transformables subscriber for improved TransformContext perf #6997
  • Optimize gap detector on dense timelines, like log_tick #7082
  • Re-enable per-series parallelism #7110
  • Query: configurable timeline|component eager slicing #7112
  • Optimize out unnecessary sorts in line series visualizer #7129
  • Implement timeseries query clamping #7133
  • Chunks:
    • Implement ChunkStore and integrate it everywhere #6570
    • Chunk concatenation primitives #6857
    • Implement on-write Chunk compaction #6858
    • CLI command for compacting recordings #6860
    • CLI command for merging recordings #6862
    • ChunkStore: implement new component-less indices and APIs #6879
    • Compaction-aware store events #6940
    • New and improved iteration APIs for Chunks #6989
    • New chunkified latest-at APIs and caches #6992
    • New chunkified range APIs and caches #6993
    • New Chunk-based time-series views #6995
    • Chunkified, deserialization-free Point Cloud visualizers #7011
    • Chunkified, (almost)deserialization-free Mesh/Asset visualizers #7016
    • Chunkified, deserialization-free LineStrip visualizers #7018
    • Chunkified, deserialization-free visualizers for all standard shapes #7020
    • Chunkified image visualizers #7023
    • Chunkify everything left #7032
    • Higher compaction thresholds by default (x4) #7113

🧑‍🏫 Examples

📚 Docs

  • New code snippet for Transform3D demonstrating an animated hierarchy #6851
  • Implement codegen of doclinks #6850
  • Add example for different data per timeline on Events and Timelines doc page #6912
  • Add troubleshooting section to pip install issues with outdated pip version #6956
  • Clarify in docs when ViewCoordinate is picked up by a 3D view #7034
  • CLI manual #7149

🖼 UI improvements

  • Display compaction information in the recording UI #6859
  • Use markdown for the view help widget #6878
  • Improve navigation between entity and data results in the selection panel #6871
  • Add support for visible time range to the dataframe view #6869
  • Make clamped component data distinguishable in the "latest at" table #6894
  • Scroll dataframe view to focused item #6908
  • Add an explicit "mode" view property to the dataframe view #6927
  • Introduce a "Selectable Toggle" widget and use it for the 3D view's camera kind #7064
  • Improve entity stats when hovered #7074
  • Update the UI colors to use our (blueish) ramp instead of pure greys #7075
  • Query editor for the dataframe view #7071
  • Better ui for Blobs, especially those representing images #7128
  • Add button for copying and saving images #7156

🕸️ Web

  • Add missing props to React package #6895
  • Fix multi rrd on app.rerun.io #6972

✨ Other enhancement

  • Support decoding multiplexed RRD streams #7091
  • Query-time clears (latest-at only) #6586
  • Introduce ChunkStore::drop_entity_path #6588
  • Implement Chunk::cell #6875
  • Implement Chunk::iter_indices #6877
  • Drop, rather than clear, removed blueprint entities #7120
  • Implement support for RangeQueryOptions::include_extended_bounds #7132

🧑‍💻 Dev-experience

  • Introduce Chunk component-level helpers and UnitChunk #6990
  • Vastly improved support for deserialized iteration #7024
  • Improved CLI: support wildcard inputs for all relevant rerun rrd subcommands #7060
  • Improved CLI: explicit CLI flags for compaction settings #7061
  • Improved CLI: stdin streaming support #7092
  • Improved CLI: stdout streaming support #7094
  • Improved CLI: implement rerun rrd filter #7095
  • Add support for rerun rrd filter --drop-entity #7185

🗣 Refactors

  • Forward Rust (de-)serialization of transparent datatypes #6793
  • CLI refactor: introduce rerun rrd <compare|print|compact> subscommand #6861
  • Remove legacy query engine and promises #7033
  • Implement RangeQueryOptions directly within RangeQuery #7131

📦 Dependencies

  • Update to glam 0.28 & replace macaw with fork re_math #6867

🤷‍ Other

  • Fix linkchecker: proper allow-list of stackoverflow.com #6838
  • Don't lint comments inside [metadata] frontmatter #6903
  • Add basic checklist to test different 3D transform types & transform hierarchy propagation #6968