Merge pull request #1234 from melanieclarke/dependency_updates #8
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| name: JWQL CI | |
| on: [push, pull_request] | |
| jobs: | |
| JWQL-CI: | |
| name: Python - ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.8, 3.9] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: jwql-${{ matrix.python-version }} | |
| - name: Bandit Check | |
| uses: jpetrucciani/bandit-check@master | |
| with: | |
| path: "./jwql/" | |
| bandit_flags: "-c .bandit" | |
| continue-on-error: false | |
| if: runner.os == 'Linux' | |
| - name: Start Redis | |
| uses: supercharge/[email protected] | |
| with: | |
| redis-version: 5.0 | |
| if: runner.os == 'Linux' | |
| - name: Build jwql conda environment and run tests | |
| shell: bash -l {0} | |
| run: | | |
| echo "Setting useful environment variables:" | |
| echo " " | |
| export PYTHONVERSION=${{ matrix.python-version }} | |
| export MAJOR="$(echo $PYTHONVERSION | head -c 1)" | |
| export MINOR="$(echo $PYTHONVERSION | tail -c 2)" | |
| echo "PYTHONVERSION: $PYTHONVERSION" | |
| echo " " | |
| echo "Installing jwql conda environment" | |
| echo " " | |
| cd $RUNNER_WORKSPACE/ | |
| cd jwql/ | |
| $CONDA/bin/conda env update -f environment_python_${MAJOR}_${MINOR}.yml -n jwql-${{ matrix.python-version }} | |
| echo " " | |
| echo "Installing jwql package" | |
| echo " " | |
| python setup.py develop | |
| echo " " | |
| echo "Testing package installation" | |
| echo " " | |
| python -c "import jwql; print('Version: ' + jwql.__version__); print('Path: ' + jwql.__path__[0])" | |
| # echo " " | |
| # echo "Reinstall numpy to fix numpy.core.multiarray error" | |
| # echo " " | |
| pip install -U numpy | |
| echo " " | |
| echo "The conda environment being used:" | |
| echo " " | |
| $CONDA/bin/conda env export | |
| echo " " | |
| echo "Running pytests" | |
| echo " " | |
| pytest jwql/tests/ |