Updated BioC versions from 3.16 to 3.17

pinin4fjords · Oct 11, 2023 · 059bd5a · 059bd5a
1 parent b544d85
commit 059bd5a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/exec/make_app_from_files.R b/exec/make_app_from_files.R
@@ -218,14 +218,14 @@ if (opt$deploy_app) {
   print("Updating BioC packages as will be required for shinyapps.io deployment")
 
   library(BiocManager)
-  options(repos = BiocManager::repositories(version = '3.16'))
+  options(repos = BiocManager::repositories(version = '3.17'))
   ood <- data.frame(BiocManager::valid()$out_of_date)
   ood_packages <- ood[grep('bioconductor', ood$Repository), 'Package']
 
   dir.create('libs', showWarnings = FALSE) 
   .libPaths('libs')
 
-  BiocManager::install(ood_packages, version = "3.16", update = TRUE, ask = FALSE, lib = 'libs')
+  BiocManager::install(ood_packages, version = "3.17", update = TRUE, ask = FALSE, lib = 'libs')
 }
 
 library(shinyngs)