Merge pull request #100 from phac-nml/HotfixMLST

bugfix add --output mlst to Search.py
phac-nml · Sep 27, 2019 · a6da633 · a6da633
2 parents 741c06c + ec65d4c
commit a6da633
Show file tree

Hide file tree

Showing 4 changed files with 9 additions and 1 deletion.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,7 @@
+# Version 0.6.1
+
+* Added --output-mlst in Search.py
+
 # Version 0.6.0
 
 * Added [coloredlogs](https://pypi.org/project/coloredlogs/) library to format the output

diff --git a/images/search_command.png b/images/search_command.png
diff --git a/staramr/__init__.py b/staramr/__init__.py
@@ -1 +1 @@
-__version__ = '0.6.0'
+__version__ = '0.6.1'
diff --git a/staramr/subcommand/Search.py b/staramr/subcommand/Search.py
@@ -142,6 +142,10 @@ def _setup_args(self, arg_parser):
         output_group.add_argument('--output-hits-dir', action='store', dest='hits_output_dir', type=str,
                                   help="The name of the directory to contain the BLAST hit files. Not be be used with '--output-dir'. [None]",
                                   default=None, required=False)
+        output_group.add_argument('--output-mlst', action='store', dest='output_mlst', type=str,
+                                  help="The name of the output file containing the mlst results. Not be be used with '--output-dir'. [None]",
+                                  default=None, required=False)
+
 
         arg_parser.add_argument('files', nargs='+')