pggb 0.5.0 - Bidirezionale

The main change is the introduction of the bidirectional wfλ in wfmash, which allows a full exploration of the high-order alignment matrix without blowing up with the memory. This leads to more and better anchors that tend to simplify the alignments during the patching phase, therefore even improving the runtime for the whole pggb run.

This introduces:

• the --version flag to display the version of pggb #218 by @AndreaGuarracino
• automatically set thread count #220 by @ekg
• docker/singularity: fix versioning, smaller image, update vcflib, and faster building #222 #224 by @AndreaGuarracino
• improved SPOA's portability (for Docker/Singularity and Bioconda) #223 by @AndreaGuarracino
• introduction of BiWFλ, bidirectional flavor of wfλ in wfmash #231 by @AndreaGuarracino
• additional diagnostic viz displaying a vertically summarized view of the graph #233 by @subwaystation
• the unchop of the graph normalized by GFAFfix #237 by @AndreaGuarracino
• all tools were updated (in particular, improved wfmash and faster odgi sort and layout) #230 #234 #235 #236