Skip to content

Commit

Permalink
bioconda is still broken
Browse files Browse the repository at this point in the history
  • Loading branch information
AndreaGuarracino committed Jun 17, 2023
1 parent 6e5427e commit 1a52e68
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,8 @@
# pggb: the PanGenome Graph Builder

![Publish container to github container registry](https://github.com/pangenome/pggb/workflows/Publish%20container%20to%20github%20container%20registry/badge.svg)
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](https://anaconda.org/bioconda/pggb)

[//]: # ([![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](https://anaconda.org/bioconda/pggb))

`pggb` builds [pangenome](https://doi.org/10.1146%2Fannurev-genom-120219-080406) [variation graphs](https://doi.org/10.1038/nbt.4227) from a set of input sequences.

Expand Down Expand Up @@ -312,7 +313,7 @@ singularity run -B ${PWD}/data:/data ../pggb_latest.sif pggb -i /data/HLA/DRB1-3

A script that handles the whole building process automatically can be found at https://github.com/nf-core/pangenome#building-a-native-container.

### Bioconda
### Bioconda (NO, IT IS CURRENTLY BROKEN, SEE [THIS ISSUE](https://github.com/pangenome/pggb/issues/294))

`pggb` recipes for Bioconda are available at https://anaconda.org/bioconda/pggb.
To install the latest version using `Conda` execute:
Expand Down

0 comments on commit 1a52e68

Please sign in to comment.