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    11 repositories

    • yachielab.github.io

      Public
      Yachielab website
      HTML
      •0•1•0•0•Updated Oct 4, 2024Oct 4, 2024

    • QUEEN

      Public
      QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
      bioinformaticsbiopythonjupyter-notebooksplasmids
      Python
      •
      MIT License
      •8•37•4•0•Updated Sep 19, 2024Sep 19, 2024

    • CloneSelect_v1

      Public
      Code repository for CloneSelect manuscript
      Jupyter Notebook
      •0•0•0•0•Updated May 31, 2024May 31, 2024

    • Interstellar

      Public
      INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads
      Python
      •
      MIT License
      •1•15•0•1•Updated May 22, 2024May 22, 2024

    • SPADE

      Public
      Python
      •
      GNU General Public License v3.0
      •6•14•0•0•Updated Feb 6, 2023Feb 6, 2023

    • Interstellar_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • FRACTAL

      Public
      FRACTAL: framework for distributed computing to trace large accurate lineages
      Python
      •
      GNU General Public License v3.0
      •5•24•0•0•Updated Sep 6, 2022Sep 6, 2022

    • PRESUME

      Public
      preparation of many diversified Sequences by simulation of evolutionary process
      Python
      •
      GNU General Public License v3.0
      •2•6•0•0•Updated Jun 9, 2022Jun 9, 2022

    • RCP-PCR_CRISPR_KO

      Public
      Analysis codes for high-throughput short read sequencing data. Especially for RCP-PCR experiments on clonal CRISPR KO samples.
      bioinformaticsnext-generation-sequencingcrispr-analysiscrisprrcp-pcr
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 6, 2022Jan 6, 2022

    • FRACTAL_experiment

      Public
      Codes used for performance test experiments of FRACTAL project
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 23, 2021Sep 23, 2021

    • base-editing-prediction

      Public
      Python
      •3•4•2•0•Updated Jun 4, 2020Jun 4, 2020