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@ReproNim Center for Reproducible Neuroimaging Computation

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    95 repositories

    • reproschema-library

      Public
      Python
      •
      Apache License 2.0
      •11•4•8•0•Updated Oct 10, 2024Oct 10, 2024

    • reproschema-agents

      Public
      multi-agent framework for reproschema
      MIT License
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • reproflow-data-sync

      Public
      DataLad dataset with all samples of recorded "ReproEvents", "ReproStim", etc data for purpose of calibration and establishing processing
      Python
      •0•0•0•1•Updated Oct 8, 2024Oct 8, 2024

    • neurodocker

      Public
      Generate custom Docker and Singularity images, and minimize existing containers
      linuxsciencedockerfilereproducible-researchcontainersneurosciencesingularity-containernipypeapptainerdocker
      Python
      •
      Apache License 2.0
      •97•327•27•5•Updated Oct 8, 2024Oct 8, 2024

    • reproschema

      Public
      A standardized form generation and data collection schema to harmonize results by design across projects.
      schemainteroperabilitystandardizing-assessmentsclinical-assessments
      Python
      •
      Other
      •20•14•12•1•Updated Oct 8, 2024Oct 8, 2024

    • containers

      Public
      Containers "distribution" for reproducible neuroimaging
      Roff
      •
      Apache License 2.0
      •15•26•38•3•Updated Oct 8, 2024Oct 8, 2024

    • reproschema-py

      Public
      Python
      •
      Apache License 2.0
      •8•2•7•6•Updated Oct 7, 2024Oct 7, 2024

    • repronim.github.io

      Public
      HTML
      •
      GNU General Public License v3.0
      •10•3•24•0•Updated Oct 3, 2024Oct 3, 2024

    • reprostim

      Public
      Automated capture of audio-visual stimuli into BIDS datasets
      reproducible-researchpsychologyneuroimaging
      C++
      •2•5•35•2•Updated Oct 3, 2024Oct 3, 2024

    • hbcd-loris2reproschema

      Public
      HBCD LORIS format to ReproSchema format
      0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • reproschema-ui

      Public
      UI to render ReproSchema based protocols and assessments.
      hacktoberfestjsonldform-ui
      Vue
      •
      Other
      •18•3•43•1•Updated Sep 21, 2024Sep 21, 2024

    • demo-protocol

      Public
      an example protocol which serves as default protocol in schema-ui
      JavaScript
      •11•0•2•0•Updated Aug 31, 2024Aug 31, 2024

    • hbcd-redcap2rs

      Public
      Python
      •1•0•1•0•Updated Jul 18, 2024Jul 18, 2024

    • reproschema-protocol-cookiecutter

      Public
      A cookiecutter for reproschema protocols.
      Python
      •0•0•0•1•Updated Jul 1, 2024Jul 1, 2024

    • ReproInventory

      Public
      A repo for developing the ReproNim inventory of training resources.
      MIT License
      •1•3•0•0•Updated Jun 30, 2024Jun 30, 2024

    • module-stats

      Public
      The statistics for reproducible neuroimaging
      Jupyter Notebook
      •
      Other
      •13•1•7•3•Updated Jun 29, 2024Jun 29, 2024

    • ReproTube

      Public
      Collection (git-annex/DataLad dataset) of educational videos
      Shell
      •0•1•8•0•Updated Jun 27, 2024Jun 27, 2024

    • WorkflowComparison

      Public
      The git repo for the workflow comparison project.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • abcd-redcap2rs

      Public
      Converting ABCD REDCap data dictionary to ReproSchema
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • artwork

      Public
      Some artwork (logos etc)
      R
      •
      MIT License
      •1•0•2•0•Updated Jun 7, 2024Jun 7, 2024

    • webinar-2024-reproflow

      Public
      HTML
      •
      Other
      •1•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • probable-journey

      Public
      Interactive agents for science
      Apache License 2.0
      •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

    • simple2_NIDM_examples

      Public
      ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad
      Python
      •12•3•1•2•Updated Jun 4, 2024Jun 4, 2024

    • nimh-minimal

      Public
      Makefile
      •
      MIT License
      •4•1•2•0•Updated May 31, 2024May 31, 2024

    • reproschema-demo-protocol

      Public
      A demo protocol for the ReproSchema paper
      Makefile
      •
      MIT License
      •0•0•0•0•Updated May 14, 2024May 14, 2024

    • SOBPHack-052024

      Public
      Website for SOBP BrainHack - 2024
      JavaScript
      •
      Other
      •2•0•5•0•Updated Apr 18, 2024Apr 18, 2024

    • repromon

      Public
      A service to monitor data acquisition etc to alert if anything goes wrong
      Python
      •1•0•2•0•Updated Apr 17, 2024Apr 17, 2024

    • eab-demo

      Public
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

    • reproflow

      Public
      Materials for ReproFlow: ReproNim tools to establish scalable and automated MRI and behavioral data acquisition and QC
      0•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • reproschema-demo

      Public archive
      A demo for the reproschema paper
      JavaScript
      •0•0•0•0•Updated Dec 20, 2023Dec 20, 2023