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@ImagingDataCommons Imaging Data Commons

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    59 repositories

    • idc-index

      Public
      Python package to simplify access to the data available from NCI Imaging Data Commons
      Python
      •
      MIT License
      •5•11•17•2•Updated Oct 7, 2024Oct 7, 2024

    • highdicom

      Public
      High-level DICOM abstractions for the Python programming language
      numpydicompython3pydicomtypehints
      Python
      •
      MIT License
      •37•172•26•8•Updated Oct 5, 2024Oct 5, 2024

    • slim

      Public
      Interoperable web-based slide microscopy viewer and annotation tool
      reactoidcdicomwebdigital-pathologyidc-viewers
      TypeScript
      •
      Apache License 2.0
      •36•118•71•3•Updated Oct 5, 2024Oct 5, 2024

    • ThrottleProxy

      Public
      (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •0•2•4•0•Updated Oct 3, 2024Oct 3, 2024

    • ViewersV3

      Public
      OHIF zero-footprint DICOM viewer tracking V3 (CORE REPO)
      core-repoidc-viewers
      TypeScript
      •
      MIT License
      •3.3k•0•2•0•Updated Oct 2, 2024Oct 2, 2024

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages (CORE REPO)
      core-repoidc-viewers
      JavaScript
      •
      MIT License
      •3.3k•2•4•1•Updated Oct 2, 2024Oct 2, 2024

    • idc-slim

      Public
      Interoperable slide microscopy viewer for thin clients (CORE REPO)
      core-repoidc-viewers
      TypeScript
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 2, 2024Oct 2, 2024

    • IDC-Common

      Public
      Shared code between repositories (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • IDC-WebApp

      Public
      Web Application front end for IDC (CORE REPO)
      core-repo
      JavaScript
      •
      Apache License 2.0
      •9•6•122•0•Updated Oct 2, 2024Oct 2, 2024

    • aws_etl

      Public
      Code to transfer IDC image files from Google Cloud Storage to AWS S3 (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •0•0•1•1•Updated Oct 1, 2024Oct 1, 2024

    • idc-sm-annotations-conversion

      Public
      conversiondicompathomics
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • CloudSegmentator

      Public
      Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud
      Jupyter Notebook
      •
      Apache License 2.0
      •2•3•4•0•Updated Sep 26, 2024Sep 26, 2024

    • dicom-microscopy-viewer

      Public
      Web-based DICOM slide microscopy viewer library
      javascriptnpmdicomopenlayersdicomwebdicom-jsonidc-viewers
      JavaScript
      •
      MIT License
      •35•100•12•5•Updated Sep 24, 2024Sep 24, 2024

    • SlicerIDCBrowser

      Public
      A 3D Slicer extension to support access to the content of NCI Imaging Data Commons
      3d-slicer-extension
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•4•12•1•Updated Sep 24, 2024Sep 24, 2024

    • IDC-Docs

      Public
      Source for IDC documentation
      BSD 3-Clause "New" or "Revised" License
      •2•4•7•1•Updated Sep 20, 2024Sep 20, 2024

    • IDC-Tutorials

      Public
      Self-guided notebook tutorials to help get started with using IDC
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •14•27•13•3•Updated Sep 20, 2024Sep 20, 2024

    • idc-prostate-mri-analysis

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•4•0•0•Updated Sep 16, 2024Sep 16, 2024

    • github_analytics

      Public
      Scripts for monitoring and archival of GitHub insights for IDC-related repositories
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • etl_flow

      Public
      (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •3•4•2•0•Updated Sep 12, 2024Sep 12, 2024

    • libdicom

      Public
      C library for reading DICOM files
      cdicommedical-imaging
      C
      •
      MIT License
      •8•16•4•1•Updated Sep 12, 2024Sep 12, 2024

    • idc-index-data

      Public
      Python package providing the index to query and download data hosted by the NCI Imaging Data Commons
      Python
      •
      MIT License
      •4•1•3•0•Updated Sep 11, 2024Sep 11, 2024

    • IDC-API

      Public
      Google Endpoints API providing programmatic access (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •3•0•3•0•Updated Sep 4, 2024Sep 4, 2024

    • pyplastimatch

      Public
      Python wrapper for Plastimatch.
      pythondicom-imagesmedical-image-processing
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •4•11•2•0•Updated Aug 27, 2024Aug 27, 2024

    • Mhubai-IDC

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • s5cmd-python-distributions

      Public
      This project provides the infrastructure to build s5cmd Python wheels.
      Python
      •
      MIT License
      •0•4•0•1•Updated Aug 5, 2024Aug 5, 2024

    • dcmqi-python-distributions

      Public
      Python
      •
      MIT License
      •1•1•0•1•Updated Aug 5, 2024Aug 5, 2024

    • idc-wsi-conversion

      Public
      (CORE REPO)
      core-repo
      Shell
      •
      Other
      •0•7•1•0•Updated Jul 28, 2024Jul 28, 2024

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •895•0•0•1•Updated Jul 23, 2024Jul 23, 2024

    • idc-dicom-seg-conversions

      Public
      Examples for converting prostate MRI-US-Biopsy STL prostate and lesion surfaces to DICOM SEG and DICOM STL.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•1•Updated Jul 1, 2024Jul 1, 2024

    • dicomweb-client

      Public
      Python client for DICOMweb RESTful services
      numpydicompython3pytestpython-requestsdicomwebpydicomtypehints
      Python
      •
      MIT License
      •38•110•15•7•Updated Jun 19, 2024Jun 19, 2024