feat: attempt v2 of gwas catalog batch job

config/configv2.yaml

@@ -0,0 +1,34 @@
+---
+DAG: GWAS_Catalog
+mode: CONTINUE
+gcp:
+  GCP_PROJECT: "open-targets-genetics-dev"
+  GCP_REGION: "europe-west1"
+  GCP_ZONE: "europe-west1-d"
+  GCP_DATAPROC_IMAGE: "2.1"
+  GCP_AUTOSCALING_POLICY: "otg-etl"
+
+steps:
+
+  manifest_preparation:
+    raw_sumstat_path_pattern:  gs://ot_orchestration/raw_summary_statistics/**/*.h.tsv.gz
+    staging_manifest_path_pattern: gs://ot_orchestration/staging/**/manifest.json
+    harmonised_prefix: harmonised
+    qc_prefix: qc
+
+  gwas-catalog-etl:
+    googlebatch:
+      resource_specs:
+        cpu_milli: 2000
+        memory_mib: 2000
+        boot_disk_mib: 10000
+      task_specs:
+        max_retry_count: 0
+        max_run_duration: "10m"
+      policy_specs:
+        machine_type: n1-standard-2
+      image: europe-west1-docker.pkg.dev/open-targets-genetics-dev/ot-orchestration/genetics_etl:dev
+      commands: ["exit 1"]
+    spark:
+      spark_uri: yarn
+      write_mode: errorifexists

src/ot_orchestration/cli/__init__.py

@@ -7,7 +7,7 @@
 from ot_orchestration.cli.process_in_batch import gwas_catalog_pipeline
 
 logging.basicConfig(level=logging.INFO)
-asci_art = """
+asci_art = r"""
    ____  ______   ____            __              __             __  _
   / __ \/_  __/  / __ \__________/ /_  ___  _____/ /__________ _/ /_(_)___  ____
  / / / / / /    / / / / ___/ ___/ __ \/ _ \/ ___/ __/ ___/ __ `/ __/ / __ \/ __ \\