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chore: updated comment
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Szymon Szyszkowski committed Sep 24, 2024
1 parent c1f8893 commit 6ae7f39
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions src/ot_orchestration/dags/genetics_etl.py
Original file line number Diff line number Diff line change
Expand Up @@ -52,9 +52,10 @@
variant_annotation_task_group_config = find_node_in_config(nodes, "variant_annotation")


# FIXME: eventually this task group should have 2 batch jobs only
# - 1. transform variant sources to vcf files, collect and partition them by chunk size
# - 2. list new chunk vcf files and annotate them DONE
# FIXME: eventually this task group should have 2 steps only
# - 1. transform variant sources to vcf files, collect and partition them by chunk size - should be done by a single gentropy step rather then
# multiple tasks in the DAG (pending)
# - 2. list new chunk vcf files and annotate them - batch job
@task_group(group_id="variant_annotation")
def variant_annotation():
"""Variant annotation task group."""
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