fix: using h4 instead of log2(h4/h3) (#740)

opentargets · Aug 30, 2024 · 2612aa7 · 2612aa7
1 parent cf1ec24
commit 2612aa7
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/gentropy/method/l2g/feature_factory.py b/src/gentropy/method/l2g/feature_factory.py
@@ -1,4 +1,5 @@
 """Collection of methods that extract features from the gentropy datasets to be fed in L2G."""
+
 from __future__ import annotations
 
 from functools import reduce
@@ -59,7 +60,7 @@ def _get_max_coloc_per_credible_set(
         colocalisation_df = colocalisation.df.select(
             f.col("leftStudyLocusId").alias("studyLocusId"),
             "rightStudyLocusId",
-            f.coalesce("log2h4h3", "clpp").alias("score"),
+            f.coalesce("h4", "clpp").alias("score"),
             ColocalisationFactory._add_colocalisation_metric(),
         )