NTR "has life cycle stage" relation

[ddooley]

And "collected during life cycle stage" relation. See #598

[anitacaron]

Please add an example of usage for both. (making Charles' review official)

[cthoyt]

My original feedback for adding an example has been satisfied, but there is still an issue where there is some spurious diff in the ro-edit.owl for "DLSafeRule" elements

[github-actions]

This PR has not seen any activity in 90 days and has been marked as stale. If it is no longer needed, please close the PR. Otherwise, please update the PR with a status update.

[anitacaron]

Technically approved. Still needs ontology review.

[anitacaron]

Technically approved. Still needs ontology review.

[wdduncan]

has life cycle stage is a subproperty of participates in, and the range of participates in is occurrent. However, the range of has life cycle stage is life cycle stage and life cycle stage is not a subclass of occurrent.

[cmungall]

Only assert on one direction

[anitacaron]

Technically, I approve. Still need ontology review.

[wdduncan]

The domain/range issue mentioned above still needs to be resolved.

[cmungall]

has life cycle stage is a subproperty of participates in, and the range of participates in is occurrent. However, the range of has life cycle stage is life cycle stage and life cycle stage is not a subclass of occurrent

It should be, but this is a general issue with RO imports and will be addressed by COB. As it's not pertinent to this PR, I suggest making a new issue, since the D/R declarations are correct in this PR.

[ddooley]

It turns out "in taxon" allows for assignment (at instance and class level) of both organisms and processes/life stages to taxa, so we can express that "pupal stage in taxon Rhopalocera". So there is no need for "has life cycle stage/life cycle stage of".

Discussion on Aug 12 recommended that "life cycle stage of" be a narrow synonym of "in taxon".

A side issue is that "in taxon" doesn't have a reverse relation, so there's no relation to put opposite relation narrow synonym on.