Make MPI an optional dependency #401
Workflow file for this run
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| name: Test | |
| on: | |
| pull_request: | |
| push: { branches: [master] } | |
| workflow_dispatch: | |
| env: | |
| python_version: '3.8' | |
| RDMAV_FORK_SAFE: 1 | |
| jobs: | |
| unit_tests: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{env.python_version}} | |
| - name: pytest | |
| run: PYTHONPATH=src pytest tests/. | |
| s0_download: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{env.python_version}} | |
| - name: Test Download (S0) | |
| working-directory: ./src | |
| run: noisepy download --start_date 2019-02-01T00:00:00 --end_date 2019-02-01T01:00:00 --stations ARV,BAK --inc_hours 1 --raw_data_path $RUNNER_TEMP/RAW_DATA | |
| - name: Cache data | |
| uses: actions/cache/save@v3 | |
| with: | |
| key: download_data-${{ github.sha }} | |
| path: ${{runner.temp}} | |
| s1_s2: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python_version: ['3.8', '3.10'] | |
| method: [linear, robust, nroot, selective, auto_covariance, pws] | |
| freq_norm: [rma, no, phase_only] | |
| runs-on: ubuntu-22.04 | |
| needs: s0_download | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{matrix.python_version}} | |
| - name: Cache data | |
| id: cache | |
| uses: actions/cache/restore@v3 | |
| with: | |
| key: download_data-${{ github.sha }} | |
| path: ${{runner.temp}} | |
| - name: Check cache hit | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: exit 1 | |
| - name: Test Cross-Correlation (S1) | |
| working-directory: ./src | |
| run: | | |
| noisepy cross_correlate --raw_data_path $RUNNER_TEMP/RAW_DATA --ccf_path $RUNNER_TEMP/CCF --freq_norm ${{matrix.freq_norm}} | |
| - name: Test Stacking (S2) | |
| working-directory: ./src | |
| run: | | |
| noisepy stack --raw_data_path $RUNNER_TEMP/RAW_DATA --ccf_path $RUNNER_TEMP/CCF --stack_path $RUNNER_TEMP/STACK --stack_method ${{matrix.method}} | |
| s1_s2_mpi: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python_version: ['3.10'] | |
| method: [linear] | |
| freq_norm: [rma] | |
| runs-on: ubuntu-22.04 | |
| needs: s0_download | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{matrix.python_version}} | |
| mpi: 'true' | |
| - name: Cache data | |
| id: cache | |
| uses: actions/cache/restore@v3 | |
| with: | |
| key: download_data-${{ github.sha }} | |
| path: ${{runner.temp}} | |
| - name: Check cache hit | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: exit 1 | |
| - name: Test Cross-Correlation (S1) | |
| working-directory: ./src | |
| run: | | |
| noisepy cross_correlate --raw_data_path $RUNNER_TEMP/RAW_DATA --ccf_path $RUNNER_TEMP/CCF --freq_norm ${{matrix.freq_norm}} | |
| - name: Test Stacking (S2) | |
| working-directory: ./src | |
| run: | | |
| mpiexec -n 3 noisepy stack --mpi --raw_data_path $RUNNER_TEMP/RAW_DATA --ccf_path $RUNNER_TEMP/CCF --stack_path $RUNNER_TEMP/STACK --stack_method ${{matrix.method}} | |
| s3_dates: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python_version: ['3.8', '3.10'] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{matrix.python_version}} | |
| - name: Test S3 data for a date range | |
| run: | | |
| noisepy cross_correlate --raw_data_path s3://scedc-pds/continuous_waveforms/ \ | |
| --ccf_path $RUNNER_TEMP/CCF_S3 --freq_norm rma \ | |
| --xml_path s3://scedc-pds/FDSNstationXML/CI/ \ | |
| --stations "SBC,RIO" --start_date 2022-02-02 --end_date 2022-02-04 | |
| s3_singlepath: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python_version: ['3.8', '3.10'] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{matrix.python_version}} | |
| - name: Test S3 data with a single path | |
| run: | | |
| noisepy cross_correlate --raw_data_path s3://scedc-pds/continuous_waveforms/2022/2022_002/ \ | |
| --ccf_path $RUNNER_TEMP/CCF_S3 --freq_norm rma \ | |
| --xml_path s3://scedc-pds/FDSNstationXML/CI/ \ | |
| --stations "SBC,RIO" |