Update attenuation modules #944
Workflow file for this run
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| name: Test | |
| on: | |
| pull_request: | |
| push: { branches: [main] } | |
| workflow_dispatch: | |
| env: | |
| python_version: '3.10' | |
| RDMAV_FORK_SAFE: 1 | |
| jobs: | |
| unit_tests: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{env.python_version}} | |
| mpi: 'true' | |
| - name: pytest | |
| run: pytest tests/. integration_tests/. --cov=noisepy.seis --cov=noisepy.monitoring | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| unit_tests_win: | |
| runs-on: windows-latest | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{env.python_version}} | |
| mpi : 'true' | |
| - name: pytest | |
| run: | | |
| set PYTHONPATH=src | |
| pytest tests/. integration_tests/. | |
| s1_s2: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python_version: ['3.9', '3.10'] | |
| method: [linear,robust, nroot, selective, auto_covariance, pws] | |
| freq_norm: [rma] | |
| format: [asdf] | |
| substack: [false] | |
| include: | |
| - method: linear | |
| python_version: '3.10' | |
| freq_norm: no | |
| format: zarr | |
| substack: true | |
| - method: all | |
| python_version: '3.9' | |
| freq_norm: phase_only | |
| format: numpy | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{matrix.python_version}} | |
| - name: Test Cross-Correlation (S1) | |
| run: | | |
| noisepy cross_correlate \ | |
| --config configs/s3_anon.yaml \ | |
| --raw_data_path s3://scedc-pds/continuous_waveforms/ \ | |
| --ccf_path $RUNNER_TEMP/CCF \ | |
| --net_list=CI \ | |
| --start=2023-01-01 \ | |
| --end=2023-01-03 \ | |
| --stations=ARV,BAK \ | |
| --xml_path=s3://scedc-pds/FDSNstationXML/CI/ \ | |
| --freq_norm ${{matrix.freq_norm}} \ | |
| --stop_on_error \ | |
| --format ${{matrix.format}} | |
| - name: Test Stacking (S2) | |
| run: | | |
| noisepy stack \ | |
| --ccf_path $RUNNER_TEMP/CCF \ | |
| --stack_path $RUNNER_TEMP/STACK \ | |
| --stack_method ${{matrix.method}} \ | |
| --stop_on_error \ | |
| --format ${{matrix.format}} | |
| s1_s2_mpi: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python_version: ['3.10'] | |
| method: [linear] | |
| freq_norm: [rma] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{matrix.python_version}} | |
| mpi: 'true' | |
| - name: Test Cross-Correlation (S1) | |
| run: | | |
| mpiexec -n 2 noisepy cross_correlate \ | |
| --config configs/s3_anon.yaml \ | |
| --mpi \ | |
| --raw_data_path s3://scedc-pds/continuous_waveforms/ \ | |
| --ccf_path $RUNNER_TEMP/CCF \ | |
| --net_list=CI \ | |
| --start=2023-01-01 \ | |
| --end=2023-01-03 \ | |
| --stations=ARV,BAK \ | |
| --xml_path=s3://scedc-pds/FDSNstationXML/CI/ \ | |
| --freq_norm ${{matrix.freq_norm}} \ | |
| --stop_on_error \ | |
| --format numpy | |
| - name: Test Stacking (S2) | |
| run: | | |
| mpiexec -n 3 noisepy stack \ | |
| --mpi \ | |
| --ccf_path $RUNNER_TEMP/CCF \ | |
| --stack_path $RUNNER_TEMP/STACK \ | |
| --stack_method ${{matrix.method}} \ | |
| --stop_on_error \ | |
| --format numpy | |
| s3_dates: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python_version: ['3.9', '3.10'] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/[email protected] | |
| - name: Setup NoisePy | |
| uses: ./.github/actions/setup | |
| with: | |
| python-version: ${{matrix.python_version}} | |
| - name: Test S3 data for a date range | |
| run: | | |
| noisepy cross_correlate --raw_data_path s3://scedc-pds/continuous_waveforms/ \ | |
| --ccf_path $RUNNER_TEMP/CCF_S3 --freq_norm rma \ | |
| --xml_path s3://scedc-pds/FDSNstationXML/CI/ \ | |
| --stations "SBC,RIO" --start_date 2022-02-02 --end_date 2022-02-04 \ | |
| --stop_on_error \ | |
| --config configs/s3_anon.yaml |