Merge pull request #62 from nfdi4plants/db-small-edits

small edits
nfdi4plants · Sep 19, 2024 · 1ad6ed0 · 1ad6ed0
2 parents fdde336 + 1d68dda
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diff --git a/src/components/Footer.astro b/src/components/Footer.astro
@@ -4,8 +4,8 @@ import { URLS } from "../statics";
 
 <footer class="footer bg-neutral text-neutral-content p-10 dark:bg-black dark:border-t-primary dark:border-t-2">
   <nav>
-    <h6 class="footer-title">Ressources</h6>
-    <a class="link link-hover" href={URLS.GITHUB_REPO}>Github</a>
+    <h6 class="footer-title">Resources</h6>
+    <a class="link link-hover" href={URLS.GITHUB_REPO}>GitHub</a>
     <a class="link link-hover" href={URLS.DATAPLANT_WEBSITE}>DataPLANT</a>
     <!-- <a class="link link-hover">Partners</a> -->
     <!-- <a class="link link-hover">Advertisement</a> -->

diff --git a/src/pages/details/resources.mdx b/src/pages/details/resources.mdx
@@ -12,16 +12,16 @@ tags: ["tools", "services", "community"]
 
 import Publication from '../../components/Publication.astro';
 
-**_ARC related resources from the community for the community._**
+**_ARC-related resources – from the community for the community._**
 
 Benefit from the accumulated knowledge of data stewards, developers, and researchers who have contributed to the ARC ecosystem.
 This page aggregates a selection of resources such as educational videos, publications, wikis, and more that have been shared by the ARC community.
 
 ## Articles and Wikis
 
-### DataPLANT knowledgebase
+### DataPLANT Knowledge Base
 
-The [DataPLANT knowledgebase](https://knowledgebase.nfdi4plants.org/) explains fundamental topics on RDM and how these aspects are implemented by the consortium to support plant researchers with RDM tools and services.
+The [DataPLANT Knowledge Base](https://knowledgebase.nfdi4plants.org/) explains fundamental topics on RDM and how these aspects are implemented by the consortium to support plant researchers with RDM tools and services.
 
 Some highlighted articles:
 
@@ -36,8 +36,10 @@ Some highlighted articles:
 DataPLANT has a [youtube channel](https://www.youtube.com/@nfdi4plants816) with educational videos on ARCs, quickstarts for tooling, and educational talks.
 
 Here are some highlights:
-- [ARCitect Quickstart playlist](https://www.youtube.com/watch?v=cC6uZkH51l4&list=PLi6d1LSow4XBZ4MKMMGOW6qDTZwe7Zg8w)
-- [CEPLAS + ARCs playlist](https://www.youtube.com/watch?v=Ay9e3mkT8R0)
+
+- [ARCitect Quickstart playlist](https://youtube.com/playlist?list=PLi6d1LSow4XBZ4MKMMGOW6qDTZwe7Zg8w&feature=shared)
+- [Swate Quickstart playlist](https://youtube.com/playlist?list=PLi6d1LSow4XCKLSHw1bZQK626L723UVd8&feature=shared)
+- [CEPLAS intro to ARCs playlist](https://www.youtube.com/watch?v=Ay9e3mkT8R0)
 
 ## Publications
 

diff --git a/src/pages/details/tools-and-services/ARCitect.md b/src/pages/details/tools-and-services/ARCitect.md
@@ -13,7 +13,8 @@ readMore:
 ---
 
 **An end-to-end GUI application to manage ARCs.** The ARCitect bundles many of the individual tools from DataPLANT into a single GUI application.
+Create and edit your ARCs.
+Synchronize ARCs with the [PLANTdataHUB](#PLANTdataHUB).
 Use [Swate](#Swate) to enrich Assays and Studies with metadata from ontologies.
 Edit any metadata directly.
-Select validation packages to use in ARC Data Hub CQC pipelines.
-Commit and sync changes to any remote repository.
+Select validation packages to use in ARC Data Hub CQC pipelines.
diff --git a/src/pages/details/tools-and-services/SWATE.md b/src/pages/details/tools-and-services/SWATE.md
@@ -15,4 +15,4 @@ readMore:
 
 Swate is a tool for **ontology-driven metadata annotation**.
 It provides a familiar, spreadsheet-like work environment that makes it easy to incrementally increase metadata quality of an [ARC Scaffold]({{INTERNAL_DEV_REPRESENTATION_ARC_SCAFFOLD}}).
-Swate is integrated into the [ARCitect](#ARCitect), but can also be used as a standalone-web based tool.
+Swate is integrated into the [ARCitect](#ARCitect), but can also be used as a [standalone-web based tool]({{DATAPLANT_SWATE_ALPHA}}).
diff --git a/src/pages/details/tools-and-services/arc-validate.md b/src/pages/details/tools-and-services/arc-validate.md
@@ -13,4 +13,4 @@ readMore:
 ---
 
 A CLI-based tool to **install, manage, and execute ARC validation packages**.
-arc-validate is used to run ARC validation in CQC pipelines at [PLANTDataHUB]({{DATAPLANT_ARC_HUB}}).
+arc-validate is used to run ARC validation in CQC pipelines at [PLANTdataHUB]({{DATAPLANT_ARC_HUB}}).
diff --git a/src/pages/details/tools-and-services/avpr.md b/src/pages/details/tools-and-services/avpr.md
@@ -1,6 +1,6 @@
 ---
 layout: ../../../layouts/MarkdownLayout.astro
-title: Arc Validation Package Registry (AVPR)
+title: ARC Validation Package Registry (AVPR)
 slug: avpr
 category: Services
 position: 4

diff --git a/src/pages/details/versioning.md b/src/pages/details/versioning.md
@@ -12,14 +12,14 @@ Applying the FAIR principles onto a dataset requires ticking numerous different
 
 ## Immutable yet evolving
 
-In reality, research is a continuous process both preceeding and succeeding the publication, i.e. an evolving sequence of snapshots, including intermediate or negative results. Therefore, a method is needed to allow applying the FAIR principles incrementally, accompanying the whole research cycle. For this, ARCs inherit a well established concept from Software Development for making the process of collection, annotation, and analysis of data more dynamic, namely versioning. For this, all ARCs are also Git repositories.
+In reality, research is a continuous process both preceding and succeeding the publication, i.e. an evolving sequence of snapshots, including intermediate or negative results. Therefore, a method is needed to allow applying the FAIR principles incrementally, accompanying the whole research cycle. For this, ARCs inherit a well established concept from Software Development for making the process of collection, annotation, and analysis of data more dynamic, namely versioning. For this, all ARCs are also Git repositories.
 
 ![Git Fairification](/arc-website/git-fairification.png)
 
 Using Git allows for the ARC to grow together with the experiment, possibly even across multiple publications. Besides this, ARCs can be shared across any Git-based platform. With Git being this wide-spread, there exist numerous hosting solutions, both publicly available and on-premise.
 
-As research is becoming increasingly multi-disciplinary, collaboration is usually a given. This collaboration should also extend to the process of fostering the ARC, as most information about an area of research can be provided by the expert conducting it. Git has well-established capabilities and workflows to allow both parallel and sequential collaboration, ensuring sanity of information and provenance of the contributor.
+As research is becoming increasingly multi-disciplinary, collaboration is usually given. This collaboration should also extend to the process of fostering the ARC, as most information about an area of research can be provided by the expert conducting it. Git has well-established capabilities and workflows to allow both parallel and sequential collaboration, ensuring sanity of information and provenance of the contributor.
 
 ![Git Collaboration](/arc-website/git-collaboration.png)
 
-Data is an integral part of ARCs and Data size can vary vastly accross different scientific domains. In order to handle large files, which can be problematic, Git LFS is used in ARCs. By this extension, the standard Git operations can be used a usual, with additional LFS capabilities being available.
+Data is an integral part of ARCs and data size can vary vastly across different scientific domains. In order to handle large files, which can be challenging, Git LFS is used in ARCs. By this extension, the standard Git operations can be used as usual, with additional LFS capabilities being available.
diff --git a/src/pages/dictionary/doi.md b/src/pages/dictionary/doi.md
@@ -0,0 +1,12 @@
+---
+layout: ../../layouts/MarkdownLayout.astro
+title: 'DOI'
+pubDate: 2024-09-19
+description: 'Digital Object Identifier'
+author: Dominik Brilhaus
+tags: ["PID"]
+keywords: ['DOI']
+url: 'doi'
+---
+
+For more information about DOIs see https://www.doi.org
diff --git a/src/statics.ts b/src/statics.ts
@@ -28,6 +28,8 @@ export enum URLS {
   DATAPLANT_WEBSITE = "https://www.nfdi4plants.org",
   DATAPLANT_ARC_HUB = "https://git.nfdi4plants.org",
   DATAPLANT_KNOWLEDGEBASE = "https://knowledgebase.nfdi4plants.org",
-  S3_DATAHUB_STATS = "https://frct-dataplant-static.s3.bwsfs.uni-freiburg.de/stats.json"
+  S3_DATAHUB_STATS = "https://frct-dataplant-static.s3.bwsfs.uni-freiburg.de/stats.json",
+
+  DATAPLANT_SWATE_ALPHA = "https://swate-alpha.nfdi4plants.org",
 
 }