1.12.1 - Silver Dolphin

Minor release, primarily to fix a problem introduced in v1.12 where not all instances of baseDir had been switched with projectDir. However, the elves have been busy and managed to squeeze in a few extra goodies along with the fix:

Template

• Finished switch from $baseDir to $projectDir in iGenomes.conf and main.nf
  • Main fix is for smail_fields which was a bug introduced in the previous release. Sorry about that!
• Ported a number of small content tweaks from nf-core/eager to the template [#786]
  • Better contributing documentation, more placeholders in documentation files, more relaxed markdownlint exceptions for certain HTML tags, more content for the PR and issue templates.

Tools helper code

• Pipeline schema: make parameters of type range to number. [#738]
• Respect $NXF_HOME when looking for pipelines with nf-core list [#798]
• Swapped PyInquirer with questionary for command line questions in launch.py [#726]
  • This should fix conda installation issues that some people had been hitting
  • The change also allows other improvements to the UI
• Fix linting crash when a file deleted but not yet staged in git [#796]