Merge pull request #3190 from mirpedrol/template-newlines

fix template new lines
nf-core · Oct 4, 2024 · f54e9eb · f54e9eb
2 parents bb2b10d + 375fad3
commit f54e9eb
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diff --git a/nf_core/pipeline-template/.editorconfig b/nf_core/pipeline-template/.editorconfig
@@ -11,7 +11,7 @@ indent_style = space
 [*.{md,yml,yaml,html,css,scss,js}]
 indent_size = 2
 
-{%- if modules %}
+{% if modules %}
 # These files are edited and tested upstream in nf-core/modules
 [/modules/nf-core/**]
 charset = unset
@@ -25,12 +25,12 @@ end_of_line = unset
 insert_final_newline = unset
 trim_trailing_whitespace = unset
 indent_style = unset
-{%- endif %}
+{% endif %}
 
-{%- if email %}
+{% if email %}
 [/assets/email*]
 indent_size = unset
-{%- endif %}
+{% endif %}
 
 # ignore python and markdown
 [*.{py,md}]

diff --git a/nf_core/pipeline-template/CITATIONS.md b/nf_core/pipeline-template/CITATIONS.md
@@ -15,10 +15,12 @@
 {% if fastqc %}- [FastQC](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/)
 
 > Andrews, S. (2010). FastQC: A Quality Control Tool for High Throughput Sequence Data [Online].
-> {% endif %} > {% if multiqc %}- [MultiQC](https://pubmed.ncbi.nlm.nih.gov/27312411/)
+> {% endif %}
+
+{% if multiqc %}- [MultiQC](https://pubmed.ncbi.nlm.nih.gov/27312411/)
 
 > Ewels P, Magnusson M, Lundin S, Käller M. MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics. 2016 Oct 1;32(19):3047-8. doi: 10.1093/bioinformatics/btw354. Epub 2016 Jun 16. PubMed PMID: 27312411; PubMed Central PMCID: PMC5039924.
-> {%- endif %}
+> {% endif %}
 
 ## Software packaging/containerisation tools
 

diff --git a/nf_core/pipeline-template/README.md b/nf_core/pipeline-template/README.md
@@ -7,7 +7,7 @@
   </picture>
 </h1>
 
-{%- else %}
+{% else %}
 
 # {{ name }}