Fix typos (third round)

nf_core/modules/lint/main_nf.py

@@ -269,7 +269,7 @@ def check_process_section(self, lines, registry, fix_version, progress_bar):
         url = None
         line = raw_line.strip(" \n'\"}:")
 
-        # Catch preceeding "container "
+        # Catch preceding "container "
         if line.startswith("container"):
             line = line.replace("container", "").strip(" \n'\"}:")
 

nf_core/pipelines/launch.py

@@ -316,7 +316,7 @@ def launch_web_gui(self):
                 raise AssertionError('"api_url" not in web_response')
             if "web_url" not in web_response:
                 raise AssertionError('"web_url" not in web_response')
-            # DO NOT FIX THIS TYPO. Needs to stay in sync with the website. Maintaining for backwards compatability.
+            # DO NOT FIX THIS TYPO. Needs to stay in sync with the website. Maintaining for backwards compatibility.
             if web_response["status"] != "recieved":
                 raise AssertionError(
                     f'web_response["status"] should be "recieved", but it is "{web_response["status"]}"'

nf_core/pipelines/schema.py

@@ -51,7 +51,7 @@ def __init__(self):
         self.defs_notation = None
         self.ignored_params = []
 
-    # Update the validation plugin code everytime the schema gets changed
+    # Update the validation plugin code every time the schema gets changed
     def set_schema_filename(self, schema: str) -> None:
         self._schema_filename = schema
         self._update_validation_plugin_from_config()
@@ -969,7 +969,7 @@ def launch_web_builder(self):
                 raise AssertionError('"api_url" not in web_response')
             if "web_url" not in web_response:
                 raise AssertionError('"web_url" not in web_response')
-            # DO NOT FIX THIS TYPO. Needs to stay in sync with the website. Maintaining for backwards compatability.
+            # DO NOT FIX THIS TYPO. Needs to stay in sync with the website. Maintaining for backwards compatibility.
             if web_response["status"] != "recieved":
                 raise AssertionError(
                     f'web_response["status"] should be "recieved", but it is "{web_response["status"]}"'

nf_core/utils.py

@@ -607,11 +607,11 @@ def request_retry(self, url, post_data=None):
         while True:
             # GET request
             if post_data is None:
-                log.debug(f"Seding GET request to {url}")
+                log.debug(f"Sending GET request to {url}")
                 r = self.get(url=url)
             # POST request
             else:
-                log.debug(f"Seding POST request to {url}")
+                log.debug(f"Sending POST request to {url}")
                 r = self.post(url=url, json=post_data)
 
             # Failed but expected - try again