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Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.0 #7037

Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.0

Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.0 #7037

Workflow file for this run

name: Create a pipeline and test it
on:
push:
branches:
- dev
paths-ignore:
- "docs/**"
- "CHANGELOG.md"
pull_request:
paths-ignore:
- "docs/**"
- "CHANGELOG.md"
release:
types: [published]
workflow_dispatch:
inputs:
runners:
description: "Runners to test on"
type: choice
options:
- "ubuntu-latest"
- "self-hosted"
default: "self-hosted"
# Cancel if a newer run is started
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
env:
NXF_ANSI_LOG: false
jobs:
RunTestWorkflow:
# use the runner given by the input if it is dispatched manually, run on github if it is a rerun or on self-hosted by default
runs-on: ${{ github.event.inputs.runners || github.run_number > 1 && 'ubuntu-latest' || 'self-hosted' }}
env:
NXF_ANSI_LOG: false
strategy:
matrix:
NXF_VER:
- "24.04.2"
- "latest-everything"
steps:
- name: go to working directory
run: |
mkdir -p create-test-wf
cd create-test-wf
export NXF_WORK=$(pwd)
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
name: Check out source-code repository
- name: Set up Python 3.12
uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5
with:
python-version: "3.12"
- name: Install python dependencies
run: |
python -m pip install --upgrade pip
pip install .
- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
with:
version: ${{ matrix.NXF_VER }}
- name: Run nf-core/tools
run: |
mkdir create-test-wf && cd create-test-wf
export NXF_WORK=$(pwd)
nf-core --log-file log.txt pipelines create -n testpipeline -d "This pipeline is for testing" -a "Testing McTestface"
nextflow run nf-core-testpipeline -profile self_hosted_runner,test --outdir ./results
- name: Upload log file artifact
if: ${{ always() }}
uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808 # v4
with:
name: nf-core-log-file-${{ matrix.NXF_VER }}
path: create-test-wf/log.txt
- name: Cleanup work directory
# cleanup work directory
run: sudo rm -rf create-test-wf
if: always()