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Fix channel declaration error in the cadd subworkflow #624

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merged 1 commit into from
Oct 4, 2024
Merged

Fix channel declaration error in the cadd subworkflow #624

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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -18,6 +18,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`

- bcftools annotate declaration in annotate CADD subworkflow [#624](https://github.com/nf-core/raredisease/pull/624)
- Rhocallviz subworkflow will only be invocated once per sample [#621](https://github.com/nf-core/raredisease/pull/621)
- Allow for VEP version 112 to be used and set it to default [#617](https://github.com/nf-core/raredisease/pull/617)

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3 changes: 1 addition & 2 deletions subworkflows/local/annotation/annotate_cadd.nf
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Expand Up @@ -30,10 +30,9 @@ workflow ANNOTATE_CADD {
ch_vcf
.join(CADD.out.tsv)
.join(TABIX_CADD.out.tbi)
.combine(ch_header)
.set { ch_annotate_in }

BCFTOOLS_ANNOTATE(ch_annotate_in)
BCFTOOLS_ANNOTATE(ch_annotate_in, ch_header)

TABIX_ANNOTATE (BCFTOOLS_ANNOTATE.out.vcf)

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