pass seq dict to mergevcfs

nf-core · Jul 26, 2023 · f2dcba3 · f2dcba3
1 parent 914cb74
commit f2dcba3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/raredisease.nf b/workflows/raredisease.nf
@@ -483,7 +483,7 @@ workflow RAREDISEASE {
                 .groupTuple()
                 .set { ch_merged_vcf }
 
-            GATK4_MERGEVCFS (ch_merged_vcf, [[],[]])
+            GATK4_MERGEVCFS (ch_merged_vcf, ch_genome_dictionary)
             ch_snv_annotate = GATK4_MERGEVCFS.out.vcf
             ch_versions = ch_versions.mix(GATK4_MERGEVCFS.out.versions)
         }