add stubs

nf-core · Oct 14, 2024 · d3c51a6 · d3c51a6
1 parent 8fdfea5
commit d3c51a6
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diff --git a/modules/local/get_chrom_sizes.nf b/modules/local/get_chrom_sizes.nf
@@ -26,4 +26,15 @@ process GET_CHROM_SIZES {
         cut: \$(echo \$(cut --help 2>&1 | head -n 1 | cut -f1,2 -d' '))
     END_VERSIONS
     """
+
+    stub:
+    """
+    touch ${fai}.sizes
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        cut: \$(echo \$(cut --help 2>&1 | head -n 1 | cut -f1,2 -d' '))
+    END_VERSIONS
+    """
+
 }
diff --git a/modules/local/rename_align_files.nf b/modules/local/rename_align_files.nf
@@ -27,4 +27,14 @@ process RENAME_ALIGN_FILES {
         ln: \$(echo \$(ln --version 2>&1 | head -n 1 | cut -d ' ' -f4))
     END_VERSIONS
     """
+
+    stub:
+    """
+    ln -s $input ${meta.sample}.${extension}
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        ln: \$(echo \$(ln --version 2>&1 | head -n 1 | cut -d ' ' -f4))
+    END_VERSIONS
+    """
 }