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Fix colabfold image to run in gpu environments with new cuda drivers #195

Merged
merged 4 commits into from
Oct 17, 2024
Merged

Fix colabfold image to run in gpu environments with new cuda drivers #195

merged 4 commits into from
Oct 17, 2024

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JoseEspinosa
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The colabfold image has been updated to run in GPU environments, the corresponding dockerfile has been updated.

Closes #188

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github-actions bot commented Oct 17, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 31ad0f4

+| ✅ 205 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: conf/igenomes_ignored.config
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-10-17 12:36:56

@JoseEspinosa JoseEspinosa merged commit bc823a1 into nf-core:dev Oct 17, 2024
18 checks passed
@JoseEspinosa JoseEspinosa deleted the i188 branch October 17, 2024 14:27
@JoseEspinosa JoseEspinosa mentioned this pull request Oct 17, 2024
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@luisas luisas luisas approved these changes

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@JoseEspinosa @luisas