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Update alphafold images and Dockerfiles #136

Merged
merged 5 commits into from
Mar 22, 2024
Merged

Update alphafold images and Dockerfiles #136

merged 5 commits into from
Mar 22, 2024

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JoseEspinosa
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@JoseEspinosa JoseEspinosa commented Mar 18, 2024 •
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Closes #135
Update the rest of Dockerfiles to use the same base image cuda:11.4.3-cudnn8-runtime-ubuntu18.04.

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github-actions bot commented Mar 18, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit d54e571

+| ✅ 186 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/ISSUE_TEMPLATE/bug_report.yml
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • multiqc_config - multiqc_config

✅ Tests passed:

Run details

  • nf-core/tools version 2.13.1
  • Run at 2024-03-20 22:46:59

@JoseEspinosa JoseEspinosa marked this pull request as ready for review March 20, 2024 14:15
@JoseEspinosa JoseEspinosa self-assigned this Mar 20, 2024
@JoseEspinosa JoseEspinosa added the WIP Work in progress label Mar 20, 2024
@JoseEspinosa JoseEspinosa removed the WIP Work in progress label Mar 22, 2024
@JoseEspinosa JoseEspinosa changed the title Update alphafold standard image Update alphafold images and Dockerfiles Mar 22, 2024
@JoseEspinosa JoseEspinosa merged commit 1bdff57 into nf-core:dev Mar 22, 2024
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@JoseEspinosa JoseEspinosa mentioned this pull request Mar 22, 2024
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@luisas luisas luisas approved these changes

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