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Merging template 2.12 #127

Merged
merged 8 commits into from
Jan 30, 2024
Merged

Merging template 2.12 #127

merged 8 commits into from
Jan 30, 2024

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JoseEspinosa
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github-actions bot commented Jan 30, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit d164612

+| ✅ 188 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗  11 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: lib/WorkflowProteinfold.groovy
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in WorkflowAlphafold2.groovy: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in check_samplesheet.py: Update the script to check the samplesheet
  • pipeline_todos - TODO string in check_samplesheet.py: Update the check_samplesheet function
  • pipeline_todos - TODO string in check_samplesheet.py: Update the column names for the input samplesheet

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.12
  • Run at 2024-01-30 22:12:00

@mashehu
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mashehu commented Jan 30, 2024

@nf-core-bot fix linting

@JoseEspinosa JoseEspinosa merged commit 6b27456 into nf-core:dev Jan 30, 2024
6 of 7 checks passed
@JoseEspinosa JoseEspinosa deleted the merging-template-2.12 branch January 30, 2024 22:52
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@mashehu mashehu mashehu approved these changes

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@JoseEspinosa @mashehu @nf-core-bot