Update kalign module to work with compressed files. #5277
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* master: (47 commits) Update genomescope2 module and add nf-tests (#5399) PLINK/GWAS additional output (#5387) Plink linkage disequilibrium additional output (#5388) new module: Plink epistasis analysis (#5386) Add module for TaxonKit name2taxid (#4778) Update-cellranger-modules (#5016) Update: GTDBTK/CLASSIFYWF (migrate to nf-test and only execute mv when dirs actually present) (#5390) Added MetaPlAn subworkflow (#5356) port `vcftools` to nf-test (#5375) Update modules: rgi (#5383) Update condaforge/mambaforge Docker tag to v24 (#5381) Update gecco + migrate to nf-test (#5372) Update learnmsa module to work with compressed files. (#5276) New module: kraken2/build (#5212) Update kalign module to work with compressed files. (#5277) port `ensemblvep/download` to nf-test (#5373) port `manta-germline` to nf-test (#5362) port `tiddit-sv` to nf-test and add `--threads` (#5371) Decoupler module (#5317) fix optional cram support in modules and migrate to nf-test (#5329) ...
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Add the compression handling introduced to MSA modules in #4754 to kalign (forgot learnmsa and kalign it in that PR).