Fix software env

nf-core · Feb 12, 2024 · 9494f70 · 9494f70
1 parent 0ed1df6
commit 9494f70
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diff --git a/modules/nf-core/umitools/prepareforrsem/environment.yml b/modules/nf-core/umitools/prepareforrsem/environment.yml
@@ -6,4 +6,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - "bioconda::umitools=0.3.4"
+  - "bioconda::umitools=1.1.4"
diff --git a/modules/nf-core/umitools/prepareforrsem/main.nf b/modules/nf-core/umitools/prepareforrsem/main.nf
@@ -3,7 +3,7 @@ process UMITOOLS_PREPAREFORRSEM {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::umi_tools=1.1.4"
+    conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/umi_tools:1.1.4--py38hbff2b2d_1' :
         'biocontainers/umi_tools:1.1.4--py38hbff2b2d_1' }"