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| ## TODO nf-core: Please run the following command to build this file: | ||
| # nf-core modules create-test-yml purecn/run | ||
| - name: "purecn run" | ||
| command: nextflow run ./tests/modules/nf-core/purecn/run -entry test_purecn_run -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/purecn/run/nextflow.config | ||
| - name: purecn run | ||
| command: nextflow run ./tests/modules/nf-core/purecn/run -entry test_purecn_run -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/purecn/run/nextflow.config -stub-run | ||
| tags: | ||
| - "purecn" | ||
| - "purecn/run" | ||
| - purecn | ||
| - purecn/run | ||
| files: | ||
| - path: "output/purecn/test.bam" | ||
| md5sum: e667c7caad0bc4b7ac383fd023c654fc | ||
| - path: "output/purecn/versions.yml" | ||
| md5sum: a01fe51bc4c6a3a6226fbf77b2c7cf3b | ||
| - path: output/purecn/test.csv | ||
| - path: output/purecn/test_variants.csv | ||
| - path: output/purecn/test.pdf | ||
| - path: output/purecn/test.rds | ||
| - path: output/purecn/test_amplification_pvalues.csv | ||
| - path: output/purecn/test_chromosomes.pdf | ||
| - path: output/purecn/test_dnacopy.seg | ||
| - path: output/purecn/test_genes.csv | ||
| - path: output/purecn/test_local_optima.pdf | ||
| - path: output/purecn/test.log | ||
| - path: output/purecn/test_loh.vcf | ||
| - path: output/purecn/test_loh.vcf.gz | ||
| - path: output/purecn/test_loh.vcf.gz.tbi | ||
| - path: output/purecn/test_loh.csv | ||
| - path: output/purecn/test_loh-effects-stats.csv | ||
| - path: output/purecn/test_loh-effects-stats.genes.txt | ||
| - path: output/purecn/test_loh-effects-stats.html | ||
| - path: output/purecn/test_loh-effects.vcf.gz | ||
| - path: output/purecn/test_loh-effects.vcf.gz.tbi | ||
| - path: output/purecn/test_lohsummary.yaml | ||
| - path: output/purecn/test_loh-effects.csv | ||
| - path: output/purecn/test_segmentation.pdf | ||
| - path: output/purecn/test_sort_coverage_loess.png | ||
| - path: output/purecn/test_sort_coverage_loess_qc.txt | ||
| - path: output/purecn/test_sort_coverage_loess.txt.gz | ||
| - path: output/purecn/test_sort_coverage.txt.gz | ||
| - path: output/purecn/versions.yml |