build: Add containers back

nf-core · Nov 30, 2023 · 41c8a02 · 41c8a02
1 parent 4c8a4cf
commit 41c8a02
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 2 deletions.
diff --git a/modules/nf-core/bowtie/align/main.nf b/modules/nf-core/bowtie/align/main.nf
@@ -3,7 +3,9 @@ process BOWTIE_ALIGN {
     label 'process_high'
 
     conda "${moduleDir}/environment.yml"
-    container "nf-core/modules/bowtie:bowtie_align--6c5b9c93546643d8"
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'nf-core/modules/bowtie/align/singularity:bowtie_align--9c6a06ebc094e52a' :
+        'nf-core/modules/bowtie/align:bowtie_align--adc5d68fc5834323' }"
 
     input:
     tuple val(meta), path(reads)

diff --git a/modules/nf-core/bowtie/build/main.nf b/modules/nf-core/bowtie/build/main.nf
@@ -3,7 +3,9 @@ process BOWTIE_BUILD {
     label 'process_high'
 
     conda "${moduleDir}/environment.yml"
-    container "nf-core/modules/bowtie:bowtie_build--df26d88a69745299"
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'nf-core/modules/bowtie/build/singularity:bowtie_build--7d5920d114506960' :
+        'nf-core/modules/bowtie/build:bowtie_build--31571fd1e6192239' }"
 
     input:
     path fasta