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arriba/arriba update env #6389

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arriba/arriba update env

arriba/arriba update env #6389

Triggered via pull request February 12, 2024 11:30
@maxulyssemaxulysse
synchronize #4242
adamrtalbot:arriba/arriba-update-env
Status Failure
Total duration 7m 41s
Artifacts 2

test.yml

on: pull_request
nf-test-changes
4s
nf-test-changes
pytest-changes
4s
pytest-changes
prettier
49s
prettier
editorconfig
10s
editorconfig
pre-commit
15s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
0s
confirm-pass
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Annotations

5 errors and 7 warnings
pytest (arriba/arriba, docker)
Process completed with exit code 1.
pytest (arriba/arriba, docker)
EACCES: permission denied, scandir '/home/runner/pytest_workflow_o219uzx1/arriba_arriba_test_arriba_paired_end/work/ae/cf890100f47e71d70fd4ba665d5b73/test._STARgenome'
pytest (arriba/arriba, conda)
Process completed with exit code 1.
pytest (arriba/arriba, singularity)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pre-commit
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-core-lint (arriba/arriba)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (arriba/arriba, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (arriba/arriba, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest (arriba/arriba, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/setup-java@v3, nf-core/setup-nextflow@v1, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
logs-conda- Expired
105 MB
logs-singularity- Expired
105 MB