Fix linting part 1 #6352
mashehutest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint
Waiting for pending jobs
Matrix: pytest
Waiting for pending jobs
confirm-pass
1s
Annotations
64 errors and 174 warnings
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nf-test (genmod/score, docker)
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nf-test (genmod/models, docker)
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nf-test (genmod/annotate, docker)
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nf-test (bcl2fastq, docker)
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nf-test (bismark/coverage2cytosine, docker)
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nf-test (fq/generate, conda)
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nf-test (foldseek/createdb, docker)
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nf-test (foldseek/easysearch, docker)
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nf-test (kaiju/kaiju2table, docker)
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nf-test (fq/generate, docker)
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nf-test (bismark/coverage2cytosine, singularity)
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nf-test (fq/generate, singularity)
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nf-test (chopper, docker)
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nf-test (bcl2fastq, singularity)
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nf-test (fq/lint, docker)
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nf-test (kaiju/kaiju2table, conda)
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nf-test (blast/blastp, docker)
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nf-test (flye, docker)
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nf-test (kaiju/kaiju2table, singularity)
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nf-test (glimpse/concordance, docker)
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nf-test (fq/subsample, docker)
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nf-test (fq/subsample, singularity)
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nf-test (fq/subsample, conda)
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nf-test (bismark/coverage2cytosine, conda)
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nf-test (glimpse/concordance, singularity)
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nf-test (glimpse/phase, docker)
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nf-test (assemblyscan, docker)
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nf-test (vardictjava, docker)
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nf-test (snakemake, singularity)
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nf-test (centrifuge/kreport, docker)
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nf-test (rtgtools/rocplot, docker)
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nf-test (snakemake, docker)
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nf-test (art/illumina, docker)
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nf-test (glimpse/concordance, conda)
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nf-test (glimpse/ligate, singularity)
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nf-test (glimpse/phase, singularity)
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nf-test (spaceranger/count, docker)
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nf-test (glimpse/sample, docker)
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nf-test (glimpse/chunk, docker)
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nf-test (spaceranger/mkref, docker)
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nf-test (bbmap/bbsplit, conda)
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nf-test (glimpse/ligate, docker)
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nf-test (svanalyzer/svbenchmark, docker)
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nf-test (art/illumina, singularity)
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nf-test (trimmomatic, docker)
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nf-test (bbmap/bbsplit, singularity)
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nf-test (bbmap/bbsplit, docker)
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nf-test (interproscan, docker)
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nf-test (trimmomatic, singularity)
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nf-test (spaceranger/mkgtf, docker)
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nf-test (art/illumina, conda)
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nf-test (interproscan, singularity)
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nf-test (glimpse/chunk, singularity)
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nf-test (glimpse/phase, conda)
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nf-test (interproscan, conda)
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nf-test (svanalyzer/svbenchmark, singularity)
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nf-test (trimmomatic, conda)
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nf-test (glimpse/chunk, conda)
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nf-test (glimpse/ligate, conda)
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nf-test (flye, singularity)
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confirm-pass
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Run tests
Strategy expansion exceeded 256 results for job 'pytest'
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Run tests
Strategy expansion exceeded 256 results for job 'nf-core-lint'
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nf-test (flye, conda)
Process completed with exit code 1.
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pre-commit
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/annotate, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/annotate, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/models, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/models, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/annotate, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/annotate, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/models, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/models, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/score, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/score, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/score, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/score, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (foldseek/easysearch, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (foldseek/easysearch, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (foldseek/easysearch, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (foldseek/easysearch, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (foldseek/createdb, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (foldseek/createdb, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (foldseek/createdb, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (foldseek/createdb, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (blast/blastp, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (blast/blastp, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (fq/lint, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (fq/lint, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (blast/blastp, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (blast/blastp, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (fq/lint, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (fq/lint, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (chopper, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (chopper, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (chopper, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (chopper, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (assemblyscan, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (assemblyscan, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (vardictjava, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (assemblyscan, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (assemblyscan, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (centrifuge/kreport, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (centrifuge/kreport, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (centrifuge/kreport, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (centrifuge/kreport, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/score, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/score, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/models, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/models, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (genmod/annotate, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (genmod/annotate, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (bcl2fastq, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (bismark/coverage2cytosine, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (bismark/coverage2cytosine, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (fq/generate, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (foldseek/createdb, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (foldseek/createdb, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (foldseek/easysearch, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (foldseek/easysearch, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (kaiju/kaiju2table, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (fq/generate, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (fq/generate, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (bismark/coverage2cytosine, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (bismark/coverage2cytosine, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
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nf-test (fq/generate, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (fq/generate, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (chopper, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (chopper, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
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nf-test (bcl2fastq, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (bcl2fastq, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (fq/lint, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (fq/lint, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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|
nf-test (kaiju/kaiju2table, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (kaiju/kaiju2table, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (blast/blastp, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (blast/blastp, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (flye, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (flye, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (kaiju/kaiju2table, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (kaiju/kaiju2table, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/concordance, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/concordance, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (fq/subsample, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (fq/subsample, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (fq/subsample, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (fq/subsample, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (fq/subsample, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (fq/subsample, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (bismark/coverage2cytosine, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (bismark/coverage2cytosine, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/concordance, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/concordance, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/phase, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/phase, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (assemblyscan, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (assemblyscan, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (vardictjava, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (vardictjava, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (snakemake, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (snakemake, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (centrifuge/kreport, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (rtgtools/rocplot, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (snakemake, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (snakemake, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (art/illumina, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (art/illumina, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/concordance, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/concordance, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/ligate, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/phase, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/phase, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (spaceranger/count, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (spaceranger/count, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (snakemake, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (snakemake, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/sample, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/sample, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (vardictjava, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (vardictjava, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/chunk, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/chunk, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (spaceranger/mkref, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (spaceranger/mkref, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (bbmap/bbsplit, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (bbmap/bbsplit, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/ligate, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/ligate, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (svanalyzer/svbenchmark, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (art/illumina, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (art/illumina, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (trimmomatic, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (bbmap/bbsplit, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (bbmap/bbsplit, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (rtgtools/rocplot, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (bbmap/bbsplit, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (interproscan, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (bbmap/bbsplit, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (interproscan, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/sample, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/sample, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/sample, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/sample, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (trimmomatic, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (spaceranger/mkgtf, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (spaceranger/mkgtf, docker)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (art/illumina, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (art/illumina, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (rtgtools/rocplot, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (interproscan, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (interproscan, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/chunk, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/chunk, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/phase, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/phase, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (interproscan, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (interproscan, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (svanalyzer/svbenchmark, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (svanalyzer/svbenchmark, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (trimmomatic, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (trimmomatic, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/chunk, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/chunk, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
|
nf-test (glimpse/ligate, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test (glimpse/ligate, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
|
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nf-test (flye, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (flye, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (spaceranger/mkref, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (spaceranger/mkref, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (spaceranger/count, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (spaceranger/count, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (spaceranger/mkgtf, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (spaceranger/mkgtf, singularity)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (flye, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (flye, conda)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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