Adding plasflow module #18163

Run time

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Job	Run time
Check for changes	8s
affy/justrma docker	2m 15s
affy/justrma singularity	6m 59s
affy/justrma conda	4m 19s
bamtools/convert docker	1m 40s
bamtools/convert singularity	5m 23s
bamtools/convert conda	4m 58s
bamtools/split docker	1m 11s
bamtools/split singularity	3m 59s
bamtools/split conda	3m 10s
bamtools/stats docker	45s
bamtools/stats singularity	4m 36s
bamtools/stats conda	2m 18s
bases2fastq docker	7m 58s
bases2fastq singularity	9m 40s
bcl2fastq docker	1m 12s
bcl2fastq singularity	4m 20s
bclconvert docker	1m 12s
bclconvert singularity	4m 12s
bwa/mem docker	10m 6s
bwa/mem singularity	13m 24s
bwa/mem conda	25m 45s
centrifuge/centrifuge docker	1m 11s
centrifuge/centrifuge singularity	4m 19s
centrifuge/centrifuge conda	3m 43s
cnvkit/access docker	1m 54s
cnvkit/access singularity	6m 45s
cnvkit/access conda	4m 23s
cnvkit/antitarget docker	1m 11s
cnvkit/antitarget singularity	4m 26s
cnvkit/antitarget conda	2m 53s
cnvkit/batch docker	8m 10s
cnvkit/batch singularity	10m 25s
cnvkit/batch conda	12m 42s
cnvkit/call docker	1m 35s
cnvkit/call singularity	4m 3s
cnvkit/call conda	3m 40s
cnvkit/export docker	2m 7s
cnvkit/export singularity	7m 0s
cnvkit/export conda	8m 2s
cnvkit/genemetrics docker	1m 17s
cnvkit/genemetrics singularity	4m 3s
cnvkit/genemetrics conda	4m 28s
cnvkit/reference docker	1m 39s
cnvkit/reference singularity	5m 27s
cnvkit/reference conda	3m 21s
cnvkit/target docker	1m 24s
cnvkit/target singularity	4m 12s
cnvkit/target conda	3m 45s
deseq2/differential docker	7m 26s
deseq2/differential singularity	14m 33s
deseq2/differential conda	13m 34s
ensemblvep/download docker	2m 53s
ensemblvep/download singularity	10m 10s
ensemblvep/download conda	5m 8s
ensemblvep/vep docker	17m 29s
ensemblvep/vep singularity	39m 22s
ensemblvep/vep conda	36m 5s
fqtk docker	43s
fqtk singularity	3m 14s
fqtk conda	2m 50s
gatk/indelrealigner docker	1m 9s
gatk/indelrealigner singularity	4m 46s
gatk/indelrealigner conda	3m 33s
gatk/realignertargetcreator docker	1m 13s
gatk/realignertargetcreator singularity	4m 12s
gatk/realignertargetcreator conda	3m 1s
gatk/unifiedgenotyper docker	1m 29s
gatk/unifiedgenotyper singularity	5m 36s
gatk/unifiedgenotyper conda	3m 15s
gatk4/determinegermlinecontigploidy docker	11m 3s
gatk4/germlinecnvcaller docker	11m 1s
gatk4/germlinecnvcaller singularity	24m 7s
gatk4/postprocessgermlinecnvcalls docker	15m 36s
gatk4/postprocessgermlinecnvcalls singularity	37m 38s
gecco/run docker	1m 12s
gecco/run singularity	4m 1s
gecco/run conda	2m 37s
gstama/merge docker	47s
gstama/merge singularity	4m 13s
gstama/merge conda	3m 47s
hicexplorer/hicpca docker	7m 27s
hicexplorer/hicpca singularity	9m 55s
hicexplorer/hicpca conda	16m 24s
hisat2/align docker	2m 26s
hisat2/align singularity	6m 13s
hisat2/align conda	8m 11s
hisat2/build docker	1m 32s
hisat2/build singularity	4m 13s
hisat2/build conda	4m 24s
homer/annotatepeaks docker	49s
homer/annotatepeaks singularity	3m 50s
homer/annotatepeaks conda	2m 58s
icountmini/metagene docker	1m 26s
icountmini/metagene singularity	3m 24s
icountmini/metagene conda	4m 15s
instrain/compare docker	3m 23s
instrain/compare singularity	5m 15s
instrain/compare conda	6m 6s
kraken2/kraken2 docker	1m 44s
kraken2/kraken2 singularity	3m 51s
kraken2/kraken2 conda	8m 7s
last/dotplot docker	48s
last/dotplot singularity	3m 10s
last/dotplot conda	3m 27s
last/lastdb docker	51s
last/lastdb singularity	4m 18s
last/lastdb conda	3m 12s
last/mafconvert docker	47s
last/mafconvert singularity	4m 47s
last/mafconvert conda	2m 58s
last/mafswap docker	1m 6s
last/mafswap singularity	3m 17s
last/mafswap conda	2m 18s
last/postmask docker	46s
last/postmask singularity	3m 18s
last/postmask conda	2m 36s
last/split docker	1m 0s
last/split singularity	3m 51s
last/split conda	2m 2s
last/train docker	1m 6s
last/train singularity	3m 41s
last/train conda	2m 37s
limma/differential docker	2m 57s
limma/differential singularity	5m 30s
limma/differential conda	7m 7s
manta/somatic docker	1m 17s
manta/somatic singularity	3m 48s
manta/somatic conda	2m 24s
manta/tumoronly docker	1m 47s
manta/tumoronly singularity	3m 39s
manta/tumoronly conda	3m 56s
metaeuk/easypredict docker	3m 9s
metaeuk/easypredict singularity	6m 3s
metaeuk/easypredict conda	4m 53s
metaphlan/metaphlan docker	1m 57s
metaphlan/metaphlan singularity	4m 33s
metaphlan/metaphlan conda	7m 50s
ngmerge docker	47s
ngmerge singularity	3m 43s
ngmerge conda	2m 28s
plasflow docker	35s
plasflow singularity	3m 21s
plasflow conda	1m 28s
pureclip docker	1m 27s
pureclip singularity	3m 55s
pureclip conda	3m 37s
purecn/run docker	1m 42s
purecn/run singularity	6m 10s
purecn/run conda	9m 42s
pyrodigal docker	49s
pyrodigal singularity	3m 32s
pyrodigal conda	2m 17s
samtools/cramsize docker	42s
samtools/cramsize singularity	3m 26s
samtools/cramsize conda	2m 29s
samtools/flagstat docker	9m 12s
samtools/flagstat singularity	10m 9s
samtools/flagstat conda	17m 46s
samtools/idxstats docker	8m 57s
samtools/idxstats singularity	10m 4s
samtools/idxstats conda	18m 17s
samtools/import docker	1m 6s
samtools/import singularity	4m 3s
samtools/import conda	4m 7s
seqkit/sliding docker	57s
seqkit/sliding singularity	3m 24s
seqkit/sliding conda	2m 59s
sequenzautils/bam2seqz docker	59s
sequenzautils/bam2seqz singularity	3m 28s
sequenzautils/bam2seqz conda	2m 3s
sequenzautils/gcwiggle docker	50s
sequenzautils/gcwiggle singularity	3m 23s
sequenzautils/gcwiggle conda	2m 51s
sgdemux docker	47s
sgdemux singularity	3m 18s
sgdemux conda	3m 18s
simpleaf/index docker	1m 2s
simpleaf/index singularity	4m 22s
simpleaf/index conda	2m 41s
simpleaf/quant docker	1m 4s
simpleaf/quant singularity	4m 27s
simpleaf/quant conda	2m 33s
snpeff/download docker	1m 12s
snpeff/download singularity	4m 52s
snpeff/download conda	2m 52s
snpeff/snpeff docker	8m 14s
snpeff/snpeff singularity	21m 24s
snpeff/snpeff conda	16m 33s
subworkflows/fastq_fastqc_umitools_fastp docker	1m 7s
subworkflows/fastq_fastqc_umitools_fastp singularity	4m 42s
subworkflows/fastq_fastqc_umitools_fastp conda	3m 6s
subworkflows/fastq_trim_fastp_fastqc docker	3m 58s
subworkflows/fastq_trim_fastp_fastqc singularity	7m 43s
subworkflows/fastq_trim_fastp_fastqc conda	7m 19s
subworkflows/vcf_annotate_ensemblvep docker	5m 30s
subworkflows/vcf_annotate_ensemblvep singularity	7m 10s
subworkflows/vcf_annotate_ensemblvep conda	8m 0s
subworkflows/vcf_annotate_ensemblvep_snpeff docker	7m 40s
subworkflows/vcf_annotate_ensemblvep_snpeff singularity	16m 8s
subworkflows/vcf_annotate_ensemblvep_snpeff conda	20m 10s
subworkflows/vcf_annotate_snpeff docker	1m 51s
subworkflows/vcf_annotate_snpeff singularity	4m 17s
subworkflows/vcf_annotate_snpeff conda	3m 33s
taxpasta/merge docker	1m 30s
taxpasta/merge singularity	4m 36s
taxpasta/merge conda	4m 11s
taxpasta/standardise docker	1m 7s
taxpasta/standardise singularity	3m 54s
taxpasta/standardise conda	3m 16s
tiddit/cov docker	1m 25s
tiddit/cov singularity	4m 39s
tiddit/cov conda	4m 13s
tiddit/sv docker	1m 41s
tiddit/sv singularity	4m 10s
tiddit/sv conda	6m 28s
ultra/align docker	1m 47s
ultra/align singularity	3m 57s
ultra/align conda	4m 20s
ultra/index docker	1m 12s
ultra/index singularity	3m 23s
ultra/index conda	3m 38s
ultra/pipeline docker	1m 25s
ultra/pipeline singularity	4m 45s
ultra/pipeline conda	3m 16s
untar docker	1m 14s
untar singularity	3m 32s
untar conda	3m 27s
vardictjava docker	1m 19s
vardictjava singularity	4m 58s
vardictjava conda	3m 11s
varlociraptor/callvariants docker	1m 19s
varlociraptor/callvariants singularity	4m 37s
varlociraptor/callvariants conda	4m 3s
varlociraptor/estimatealignmentproperties docker	48s
varlociraptor/estimatealignmentproperties singularity	4m 6s
varlociraptor/estimatealignmentproperties conda	1m 53s
varlociraptor/preprocess docker	57s
varlociraptor/preprocess singularity	3m 18s
varlociraptor/preprocess conda	2m 35s
	20h 1m 45s

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Adding plasflow module #18163

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Adding plasflow module #18163

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