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Fix invalid GATK container (#3673) #18146

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Fix invalid GATK container (#3673)

Fix invalid GATK container (#3673) #18146

Triggered via push July 27, 2023 10:07
@github-merge-queuegithub-merge-queue[bot]
pushed c6257c1
master
Status Cancelled
Total duration 5m 5s
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pytest-workflow.yml

on: push
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Matrix: test
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5 errors and 5 warnings
gatk4/postprocessgermlinecnvcalls docker
The operation was canceled.
gatk4/postprocessgermlinecnvcalls singularity
The operation was canceled.
gatk4/determinegermlinecontigploidy docker
The operation was canceled.
gatk4/germlinecnvcaller docker
The operation was canceled.
gatk4/germlinecnvcaller singularity
The operation was canceled.
gatk4/postprocessgermlinecnvcalls docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/postprocessgermlinecnvcalls singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/determinegermlinecontigploidy docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/germlinecnvcaller docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/germlinecnvcaller singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/