Update some module versions #16042

Run time

Learn about OS pricing on GitHub Actions

Job	Run time
pytest-changes	5s
pytest-changes	5s
pytest-changes	5s
pytest-changes	5s
pre-commit	41s
pre-commit	41s
pre-commit	41s
pre-commit	41s
nf-test-changes	2m 54s
nf-test-changes	2m 54s
nf-test-changes	2m 54s
nf-test-changes	2m 54s
editorconfig	11s
editorconfig	11s
editorconfig	11s
editorconfig	11s
prettier	29s
prettier	29s
prettier	29s
prettier	29s
pytest (picard/collectrnaseqmetrics, conda)	2m 25s
pytest (picard/collectrnaseqmetrics, conda)	2m 2s
pytest (picard/collectrnaseqmetrics, conda)	1m 49s
pytest (picard/collectrnaseqmetrics, conda)	2m 39s
pytest (picard/collectrnaseqmetrics, docker)	3m 43s
pytest (picard/collectrnaseqmetrics, docker)	3m 43s
pytest (picard/collectrnaseqmetrics, docker)	3m 43s
pytest (picard/collectrnaseqmetrics, docker)	3m 43s
pytest (picard/collectrnaseqmetrics, singularity)	4m 41s
pytest (picard/collectrnaseqmetrics, singularity)	4m 41s
pytest (picard/collectrnaseqmetrics, singularity)	4m 41s
pytest (picard/collectrnaseqmetrics, singularity)	4m 41s
pytest (picard/filtersamreads, conda)	2m 51s
pytest (picard/filtersamreads, conda)	3m 24s
pytest (picard/filtersamreads, conda)	3m 46s
pytest (picard/filtersamreads, conda)	2m 55s
pytest (picard/filtersamreads, docker)	4m 8s
pytest (picard/filtersamreads, docker)	4m 8s
pytest (picard/filtersamreads, docker)	4m 8s
pytest (picard/filtersamreads, docker)	4m 8s
pytest (picard/filtersamreads, singularity)	4m 54s
pytest (picard/filtersamreads, singularity)	4m 54s
pytest (picard/filtersamreads, singularity)	4m 54s
pytest (picard/filtersamreads, singularity)	4m 54s
nf-core-lint-modules (bedgraph_bedclip_bedgraphtobigwig)	47s
nf-core-lint-modules (bedgraph_bedclip_bedgraphtobigwig)	47s
nf-core-lint-modules (bedgraph_bedclip_bedgraphtobigwig)	47s
nf-core-lint-modules (bedgraph_bedclip_bedgraphtobigwig)	47s
nf-core-lint-modules (bam_qc_picard)	48s
nf-core-lint-modules (bam_qc_picard)	48s
nf-core-lint-modules (bam_qc_picard)	48s
nf-core-lint-modules (bam_qc_picard)	48s
nf-core-lint-modules (quantify_pseudo_alignment)	54s
nf-core-lint-modules (quantify_pseudo_alignment)	54s
nf-core-lint-modules (quantify_pseudo_alignment)	54s
nf-core-lint-modules (quantify_pseudo_alignment)	54s
nf-core-lint-modules (bam_markduplicates_picard)	47s
nf-core-lint-modules (bam_markduplicates_picard)	47s
nf-core-lint-modules (bam_markduplicates_picard)	47s
nf-core-lint-modules (bam_markduplicates_picard)	47s
nf-core-lint-modules (fastq_subsample_fq_salmon)	53s
nf-core-lint-modules (fastq_subsample_fq_salmon)	53s
nf-core-lint-modules (fastq_subsample_fq_salmon)	53s
nf-core-lint-modules (fastq_subsample_fq_salmon)	53s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)	45s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)	45s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)	45s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)	45s
nf-core-lint-modules (trimgalore)	2m 10s
nf-core-lint-modules (trimgalore)	2m 10s
nf-core-lint-modules (trimgalore)	2m 10s
nf-core-lint-modules (trimgalore)	2m 10s
nf-core-lint-modules (picard/markduplicates)	1m 8s
nf-core-lint-modules (picard/markduplicates)	1m 8s
nf-core-lint-modules (picard/markduplicates)	1m 8s
nf-core-lint-modules (picard/markduplicates)	1m 8s
nf-core-lint-modules (proovframe/fix)	1m 21s
nf-core-lint-modules (proovframe/fix)	1m 21s
nf-core-lint-modules (proovframe/fix)	1m 21s
nf-core-lint-modules (proovframe/fix)	1m 21s
nf-core-lint-modules (picard/bedtointervallist)	1m 8s
nf-core-lint-modules (picard/bedtointervallist)	1m 8s
nf-core-lint-modules (picard/bedtointervallist)	1m 8s
nf-core-lint-modules (picard/bedtointervallist)	1m 8s
nf-core-lint-modules (stringtie/stringtie)	1m 55s
nf-core-lint-modules (stringtie/stringtie)	1m 55s
nf-core-lint-modules (stringtie/stringtie)	1m 55s
nf-core-lint-modules (stringtie/stringtie)	1m 55s
nf-core-lint-modules (summarizedexperiment/summarizedexperiment)	2m 5s
nf-core-lint-modules (summarizedexperiment/summarizedexperiment)	2m 5s
nf-core-lint-modules (summarizedexperiment/summarizedexperiment)	2m 5s
nf-core-lint-modules (summarizedexperiment/summarizedexperiment)	2m 5s
nf-core-lint-modules (bedtools/nuc)	1m 11s
nf-core-lint-modules (bedtools/nuc)	1m 11s
nf-core-lint-modules (bedtools/nuc)	1m 11s
nf-core-lint-modules (bedtools/nuc)	1m 11s
nf-core-lint-modules (subread/featurecounts)	1m 10s
nf-core-lint-modules (subread/featurecounts)	1m 10s
nf-core-lint-modules (subread/featurecounts)	1m 10s
nf-core-lint-modules (subread/featurecounts)	1m 10s
nf-core-lint-modules (picard/sortsam)	1m 13s
nf-core-lint-modules (picard/sortsam)	1m 13s
nf-core-lint-modules (picard/sortsam)	1m 13s
nf-core-lint-modules (picard/sortsam)	1m 13s
nf-core-lint-modules (pangolin)	2m 1s
nf-core-lint-modules (pangolin)	2m 1s
nf-core-lint-modules (pangolin)	2m 1s
nf-core-lint-modules (pangolin)	2m 1s
nf-core-lint-modules (picard/extractfingerprint)	1m 58s
nf-core-lint-modules (picard/extractfingerprint)	1m 58s
nf-core-lint-modules (picard/extractfingerprint)	1m 58s
nf-core-lint-modules (picard/extractfingerprint)	1m 58s
nf-core-lint-modules (custom/tx2gene)	1m 23s
nf-core-lint-modules (custom/tx2gene)	1m 23s
nf-core-lint-modules (custom/tx2gene)	1m 23s
nf-core-lint-modules (custom/tx2gene)	1m 23s
nf-core-lint-modules (proovframe/map)	1m 16s
nf-core-lint-modules (proovframe/map)	1m 16s
nf-core-lint-modules (proovframe/map)	1m 16s
nf-core-lint-modules (proovframe/map)	1m 16s
nf-core-lint-modules (bcftools/annotate)	1m 20s
nf-core-lint-modules (bcftools/annotate)	1m 20s
nf-core-lint-modules (bcftools/annotate)	1m 20s
nf-core-lint-modules (bcftools/annotate)	1m 20s
nf-core-lint-modules (picard/collecthsmetrics)	1m 15s
nf-core-lint-modules (picard/collecthsmetrics)	1m 15s
nf-core-lint-modules (picard/collecthsmetrics)	1m 15s
nf-core-lint-modules (picard/collecthsmetrics)	1m 15s
nf-core-lint-modules (salmon/index)	1m 8s
nf-core-lint-modules (salmon/index)	1m 8s
nf-core-lint-modules (salmon/index)	1m 8s
nf-core-lint-modules (salmon/index)	1m 8s
nf-core-lint-modules (picard/fastqtosam)	1m 11s
nf-core-lint-modules (picard/fastqtosam)	1m 11s
nf-core-lint-modules (picard/fastqtosam)	1m 11s
nf-core-lint-modules (picard/fastqtosam)	1m 11s
nf-core-lint-modules (picard/createsequencedictionary)	1m 23s
nf-core-lint-modules (picard/createsequencedictionary)	1m 23s
nf-core-lint-modules (picard/createsequencedictionary)	1m 23s
nf-core-lint-modules (picard/createsequencedictionary)	1m 23s
nf-core-lint-modules (picard/mergesamfiles)	1m 23s
nf-core-lint-modules (picard/mergesamfiles)	1m 23s
nf-core-lint-modules (picard/mergesamfiles)	1m 23s
nf-core-lint-modules (picard/mergesamfiles)	1m 23s
nf-core-lint-modules (picard/scatterintervalsbyns)	1m 14s
nf-core-lint-modules (picard/scatterintervalsbyns)	1m 14s
nf-core-lint-modules (picard/scatterintervalsbyns)	1m 14s
nf-core-lint-modules (picard/scatterintervalsbyns)	1m 14s
nf-core-lint-modules (picard/crosscheckfingerprints)	1m 10s
nf-core-lint-modules (picard/crosscheckfingerprints)	1m 10s
nf-core-lint-modules (picard/crosscheckfingerprints)	1m 10s
nf-core-lint-modules (picard/crosscheckfingerprints)	1m 10s
nf-core-lint-modules (picard/sortvcf)	1m 9s
nf-core-lint-modules (picard/sortvcf)	1m 9s
nf-core-lint-modules (picard/sortvcf)	1m 9s
nf-core-lint-modules (picard/sortvcf)	1m 9s
nf-core-lint-modules (tximeta/tximport)	1m 9s
nf-core-lint-modules (tximeta/tximport)	1m 9s
nf-core-lint-modules (tximeta/tximport)	1m 9s
nf-core-lint-modules (tximeta/tximport)	1m 9s
nf-core-lint-modules (picard/collectmultiplemetrics)	1m 12s
nf-core-lint-modules (picard/collectmultiplemetrics)	1m 12s
nf-core-lint-modules (picard/collectmultiplemetrics)	1m 12s
nf-core-lint-modules (picard/collectmultiplemetrics)	1m 12s
nf-core-lint-modules (stringtie/merge)	1m 8s
nf-core-lint-modules (stringtie/merge)	1m 8s
nf-core-lint-modules (stringtie/merge)	1m 8s
nf-core-lint-modules (stringtie/merge)	1m 8s
nf-core-lint-modules (ucsc/bedgraphtobigwig)	2m 3s
nf-core-lint-modules (ucsc/bedgraphtobigwig)	2m 3s
nf-core-lint-modules (ucsc/bedgraphtobigwig)	2m 3s
nf-core-lint-modules (ucsc/bedgraphtobigwig)	2m 3s
nf-core-lint-modules (picard/cleansam)	1m 8s
nf-core-lint-modules (picard/cleansam)	1m 8s
nf-core-lint-modules (picard/cleansam)	1m 8s
nf-core-lint-modules (picard/cleansam)	1m 8s
nf-core-lint-modules (salmon/quant)	1m 9s
nf-core-lint-modules (salmon/quant)	1m 9s
nf-core-lint-modules (salmon/quant)	1m 9s
nf-core-lint-modules (salmon/quant)	1m 9s
nf-core-lint-modules (picard/addorreplacereadgroups)	1m 12s
nf-core-lint-modules (picard/addorreplacereadgroups)	1m 12s
nf-core-lint-modules (picard/addorreplacereadgroups)	1m 12s
nf-core-lint-modules (picard/addorreplacereadgroups)	1m 12s
nf-core-lint-modules (elprep/fastatoelfasta)	1m 21s
nf-core-lint-modules (elprep/fastatoelfasta)	1m 21s
nf-core-lint-modules (elprep/fastatoelfasta)	1m 21s
nf-core-lint-modules (elprep/fastatoelfasta)	1m 21s
nf-core-lint-modules (picard/collectinsertsizemetrics)	1m 10s
nf-core-lint-modules (picard/collectinsertsizemetrics)	1m 10s
nf-core-lint-modules (picard/collectinsertsizemetrics)	1m 10s
nf-core-lint-modules (picard/collectinsertsizemetrics)	1m 10s
nf-core-lint-modules (svdb/merge)	2m 6s
nf-core-lint-modules (svdb/merge)	2m 6s
nf-core-lint-modules (svdb/merge)	2m 6s
nf-core-lint-modules (svdb/merge)	2m 6s
nf-core-lint-modules (custom/getchromsizes)	1m 23s
nf-core-lint-modules (custom/getchromsizes)	1m 23s
nf-core-lint-modules (custom/getchromsizes)	1m 23s
nf-core-lint-modules (custom/getchromsizes)	1m 23s
nf-core-lint-modules (picard/liftovervcf)	2m 3s
nf-core-lint-modules (picard/liftovervcf)	2m 3s
nf-core-lint-modules (picard/liftovervcf)	2m 3s
nf-core-lint-modules (picard/liftovervcf)	2m 3s
nf-core-lint-modules (picard/collectwgsmetrics)	1m 8s
nf-core-lint-modules (picard/collectwgsmetrics)	1m 8s
nf-core-lint-modules (picard/collectwgsmetrics)	1m 8s
nf-core-lint-modules (picard/collectwgsmetrics)	1m 8s
nf-core-lint-modules (picard/fixmateinformation)	1m 26s
nf-core-lint-modules (picard/fixmateinformation)	1m 26s
nf-core-lint-modules (picard/fixmateinformation)	1m 26s
nf-core-lint-modules (picard/fixmateinformation)	1m 26s
nf-core-lint-modules (bedtools/split)	1m 43s
nf-core-lint-modules (bedtools/split)	1m 43s
nf-core-lint-modules (bedtools/split)	1m 43s
nf-core-lint-modules (bedtools/split)	1m 43s
nf-core-lint-modules (picard/renamesampleinvcf)	1m 10s
nf-core-lint-modules (picard/renamesampleinvcf)	1m 10s
nf-core-lint-modules (picard/renamesampleinvcf)	1m 10s
nf-core-lint-modules (picard/renamesampleinvcf)	1m 10s
nf-test (modules/nf-core/trimgalore, conda)	4m 36s
nf-test (modules/nf-core/trimgalore, conda)	4m 36s
nf-test (modules/nf-core/trimgalore, conda)	4m 36s
nf-test (modules/nf-core/trimgalore, conda)	4m 36s
nf-test (modules/nf-core/trimgalore, docker_self_hosted)	2m 26s
nf-test (modules/nf-core/trimgalore, docker_self_hosted)	2m 32s
nf-test (modules/nf-core/trimgalore, docker_self_hosted)	2m 32s
nf-test (modules/nf-core/trimgalore, docker_self_hosted)	2m 32s
nf-test (modules/nf-core/trimgalore, singularity)	2m 48s
nf-test (modules/nf-core/trimgalore, singularity)	2m 48s
nf-test (modules/nf-core/trimgalore, singularity)	2m 48s
nf-test (modules/nf-core/trimgalore, singularity)	2m 48s
nf-test (modules/nf-core/picard/markduplicates, conda)	1s
nf-test (modules/nf-core/picard/markduplicates, conda)	6m 16s
nf-test (modules/nf-core/picard/markduplicates, conda)	6m 16s
nf-test (modules/nf-core/picard/markduplicates, conda)	6m 16s
nf-test (modules/nf-core/picard/markduplicates, docker_self_hosted)	4m 3s
nf-test (modules/nf-core/picard/markduplicates, docker_self_hosted)	4m 3s
nf-test (modules/nf-core/picard/markduplicates, docker_self_hosted)	4m 3s
nf-test (modules/nf-core/picard/markduplicates, docker_self_hosted)	4m 3s
nf-test (modules/nf-core/picard/markduplicates, singularity)	4m 2s
nf-test (modules/nf-core/picard/markduplicates, singularity)	4m 2s
nf-test (modules/nf-core/picard/markduplicates, singularity)	4m 2s
nf-test (modules/nf-core/picard/markduplicates, singularity)	4m 2s
nf-test (modules/nf-core/proovframe/fix, conda)	4m 30s
nf-test (modules/nf-core/proovframe/fix, conda)	4m 30s
nf-test (modules/nf-core/proovframe/fix, conda)	4m 30s
nf-test (modules/nf-core/proovframe/fix, conda)	4m 30s
nf-test (modules/nf-core/proovframe/fix, docker_self_hosted)	1m 56s
nf-test (modules/nf-core/proovframe/fix, docker_self_hosted)	1m 56s
nf-test (modules/nf-core/proovframe/fix, docker_self_hosted)	1m 56s
nf-test (modules/nf-core/proovframe/fix, docker_self_hosted)	1m 56s
nf-test (modules/nf-core/proovframe/fix, singularity)	2m 31s
nf-test (modules/nf-core/proovframe/fix, singularity)	2m 31s
nf-test (modules/nf-core/proovframe/fix, singularity)	2m 31s
nf-test (modules/nf-core/proovframe/fix, singularity)	2m 31s
nf-test (modules/nf-core/picard/bedtointervallist, conda)	3m 8s
nf-test (modules/nf-core/picard/bedtointervallist, conda)	3m 8s
nf-test (modules/nf-core/picard/bedtointervallist, conda)	3m 8s
nf-test (modules/nf-core/picard/bedtointervallist, conda)	3m 8s
nf-test (modules/nf-core/picard/bedtointervallist, docker_self_hosted)	2m 25s
nf-test (modules/nf-core/picard/bedtointervallist, docker_self_hosted)	2m 25s
nf-test (modules/nf-core/picard/bedtointervallist, docker_self_hosted)	2m 25s
nf-test (modules/nf-core/picard/bedtointervallist, docker_self_hosted)	2m 25s
nf-test (modules/nf-core/picard/bedtointervallist, singularity)	2m 7s
nf-test (modules/nf-core/picard/bedtointervallist, singularity)	2m 7s
nf-test (modules/nf-core/picard/bedtointervallist, singularity)	2m 7s
nf-test (modules/nf-core/picard/bedtointervallist, singularity)	2m 7s
nf-test (modules/nf-core/stringtie/stringtie, conda)	8m 42s
nf-test (modules/nf-core/stringtie/stringtie, conda)	8m 42s
nf-test (modules/nf-core/stringtie/stringtie, conda)	8m 42s
nf-test (modules/nf-core/stringtie/stringtie, conda)	8m 42s
nf-test (modules/nf-core/stringtie/stringtie, docker_self_hosted)	2m 58s
nf-test (modules/nf-core/stringtie/stringtie, docker_self_hosted)	2m 58s
nf-test (modules/nf-core/stringtie/stringtie, docker_self_hosted)	2m 58s
nf-test (modules/nf-core/stringtie/stringtie, docker_self_hosted)	2m 58s
nf-test (modules/nf-core/stringtie/stringtie, singularity)	3m 34s
nf-test (modules/nf-core/stringtie/stringtie, singularity)	3m 34s
nf-test (modules/nf-core/stringtie/stringtie, singularity)	3m 34s
nf-test (modules/nf-core/stringtie/stringtie, singularity)	3m 34s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, conda)	22m 39s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, conda)	22m 39s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, conda)	22m 39s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, conda)	22m 39s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, docker_self_hosted)	9m 20s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, docker_self_hosted)	9m 20s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, docker_self_hosted)	9m 20s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, docker_self_hosted)	9m 20s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, singularity)	8m 57s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, singularity)	8m 57s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, singularity)	8m 57s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, singularity)	8m 57s
nf-test (modules/nf-core/bedtools/nuc, conda)	3m 46s
nf-test (modules/nf-core/bedtools/nuc, conda)	3m 46s
nf-test (modules/nf-core/bedtools/nuc, conda)	3m 46s
nf-test (modules/nf-core/bedtools/nuc, conda)	3m 46s
nf-test (modules/nf-core/bedtools/nuc, docker_self_hosted)	1m 55s
nf-test (modules/nf-core/bedtools/nuc, docker_self_hosted)	1m 55s
nf-test (modules/nf-core/bedtools/nuc, docker_self_hosted)	1m 55s
nf-test (modules/nf-core/bedtools/nuc, docker_self_hosted)	1m 55s
nf-test (modules/nf-core/bedtools/nuc, singularity)	1m 44s
nf-test (modules/nf-core/bedtools/nuc, singularity)	1m 44s
nf-test (modules/nf-core/bedtools/nuc, singularity)	1m 44s
nf-test (modules/nf-core/bedtools/nuc, singularity)	1m 44s
nf-test (modules/nf-core/subread/featurecounts, conda)	5m 7s
nf-test (modules/nf-core/subread/featurecounts, conda)	5m 7s
nf-test (modules/nf-core/subread/featurecounts, conda)	5m 7s
nf-test (modules/nf-core/subread/featurecounts, conda)	5m 7s
nf-test (modules/nf-core/subread/featurecounts, docker_self_hosted)	3m 43s
nf-test (modules/nf-core/subread/featurecounts, docker_self_hosted)	3m 43s
nf-test (modules/nf-core/subread/featurecounts, docker_self_hosted)	3m 43s
nf-test (modules/nf-core/subread/featurecounts, docker_self_hosted)	3m 43s
nf-test (modules/nf-core/subread/featurecounts, singularity)	1s
nf-test (modules/nf-core/subread/featurecounts, singularity)	3m 1s
nf-test (modules/nf-core/subread/featurecounts, singularity)	3m 1s
nf-test (modules/nf-core/subread/featurecounts, singularity)	3m 1s
nf-test (modules/nf-core/picard/sortsam, conda)	3m 44s
nf-test (modules/nf-core/picard/sortsam, conda)	3m 44s
nf-test (modules/nf-core/picard/sortsam, conda)	3m 44s
nf-test (modules/nf-core/picard/sortsam, conda)	3m 44s
nf-test (modules/nf-core/picard/sortsam, docker_self_hosted)	2m 16s
nf-test (modules/nf-core/picard/sortsam, docker_self_hosted)	2m 16s
nf-test (modules/nf-core/picard/sortsam, docker_self_hosted)	2m 16s
nf-test (modules/nf-core/picard/sortsam, docker_self_hosted)	2m 16s
nf-test (modules/nf-core/picard/sortsam, singularity)	2m 24s
nf-test (modules/nf-core/picard/sortsam, singularity)	2m 24s
nf-test (modules/nf-core/picard/sortsam, singularity)	2m 24s
nf-test (modules/nf-core/picard/sortsam, singularity)	2m 24s
nf-test (modules/nf-core/pangolin, conda)	3m 46s
nf-test (modules/nf-core/pangolin, conda)	7m 23s
nf-test (modules/nf-core/pangolin, conda)	7m 23s
nf-test (modules/nf-core/pangolin, conda)	7m 23s
nf-test (modules/nf-core/pangolin, docker_self_hosted)	4m 38s
nf-test (modules/nf-core/pangolin, docker_self_hosted)	4m 38s
nf-test (modules/nf-core/pangolin, docker_self_hosted)	4m 38s
nf-test (modules/nf-core/pangolin, docker_self_hosted)	4m 38s
nf-test (modules/nf-core/pangolin, singularity)	2m 21s
nf-test (modules/nf-core/pangolin, singularity)	2m 21s
nf-test (modules/nf-core/pangolin, singularity)	2m 21s
nf-test (modules/nf-core/pangolin, singularity)	2m 21s
nf-test (modules/nf-core/picard/extractfingerprint, conda)	3m 41s
nf-test (modules/nf-core/picard/extractfingerprint, conda)	3m 41s
nf-test (modules/nf-core/picard/extractfingerprint, conda)	3m 41s
nf-test (modules/nf-core/picard/extractfingerprint, conda)	3m 41s
nf-test (modules/nf-core/picard/extractfingerprint, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/extractfingerprint, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/extractfingerprint, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/extractfingerprint, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/extractfingerprint, singularity)	2m 46s
nf-test (modules/nf-core/picard/extractfingerprint, singularity)	2m 46s
nf-test (modules/nf-core/picard/extractfingerprint, singularity)	2m 46s
nf-test (modules/nf-core/picard/extractfingerprint, singularity)	2m 46s
nf-test (modules/nf-core/custom/tx2gene, conda)	4m 18s
nf-test (modules/nf-core/custom/tx2gene, conda)	4m 18s
nf-test (modules/nf-core/custom/tx2gene, conda)	4m 18s
nf-test (modules/nf-core/custom/tx2gene, conda)	4m 18s
nf-test (modules/nf-core/custom/tx2gene, docker_self_hosted)	2m 3s
nf-test (modules/nf-core/custom/tx2gene, docker_self_hosted)	2m 3s
nf-test (modules/nf-core/custom/tx2gene, docker_self_hosted)	2m 3s
nf-test (modules/nf-core/custom/tx2gene, docker_self_hosted)	2m 3s
nf-test (modules/nf-core/custom/tx2gene, singularity)	2m 7s
nf-test (modules/nf-core/custom/tx2gene, singularity)	2m 7s
nf-test (modules/nf-core/custom/tx2gene, singularity)	2m 7s
nf-test (modules/nf-core/custom/tx2gene, singularity)	2m 7s
nf-test (modules/nf-core/proovframe/map, conda)	2m 29s
nf-test (modules/nf-core/proovframe/map, conda)	3m 31s
nf-test (modules/nf-core/proovframe/map, conda)	3m 31s
nf-test (modules/nf-core/proovframe/map, conda)	3m 31s
nf-test (modules/nf-core/proovframe/map, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/proovframe/map, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/proovframe/map, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/proovframe/map, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/proovframe/map, singularity)	2m 36s
nf-test (modules/nf-core/proovframe/map, singularity)	2m 36s
nf-test (modules/nf-core/proovframe/map, singularity)	2m 36s
nf-test (modules/nf-core/proovframe/map, singularity)	2m 36s
nf-test (modules/nf-core/bcftools/annotate, conda)	7m 33s
nf-test (modules/nf-core/bcftools/annotate, conda)	7m 33s
nf-test (modules/nf-core/bcftools/annotate, conda)	7m 33s
nf-test (modules/nf-core/bcftools/annotate, conda)	7m 33s
nf-test (modules/nf-core/bcftools/annotate, docker_self_hosted)	1m 58s
nf-test (modules/nf-core/bcftools/annotate, docker_self_hosted)	3m 57s
nf-test (modules/nf-core/bcftools/annotate, docker_self_hosted)	3m 57s
nf-test (modules/nf-core/bcftools/annotate, docker_self_hosted)	3m 57s
nf-test (modules/nf-core/bcftools/annotate, singularity)	4m 20s
nf-test (modules/nf-core/bcftools/annotate, singularity)	4m 20s
nf-test (modules/nf-core/bcftools/annotate, singularity)	4m 20s
nf-test (modules/nf-core/bcftools/annotate, singularity)	4m 20s
nf-test (modules/nf-core/picard/collecthsmetrics, conda)	8m 32s
nf-test (modules/nf-core/picard/collecthsmetrics, conda)	8m 32s
nf-test (modules/nf-core/picard/collecthsmetrics, conda)	8m 32s
nf-test (modules/nf-core/picard/collecthsmetrics, conda)	8m 32s
nf-test (modules/nf-core/picard/collecthsmetrics, docker_self_hosted)	5m 4s
nf-test (modules/nf-core/picard/collecthsmetrics, docker_self_hosted)	5m 4s
nf-test (modules/nf-core/picard/collecthsmetrics, docker_self_hosted)	5m 4s
nf-test (modules/nf-core/picard/collecthsmetrics, docker_self_hosted)	5m 4s
nf-test (modules/nf-core/picard/collecthsmetrics, singularity)	6m 43s
nf-test (modules/nf-core/picard/collecthsmetrics, singularity)	6m 43s
nf-test (modules/nf-core/picard/collecthsmetrics, singularity)	6m 43s
nf-test (modules/nf-core/picard/collecthsmetrics, singularity)	6m 43s
nf-test (modules/nf-core/salmon/index, conda)	3m 8s
nf-test (modules/nf-core/salmon/index, conda)	3m 8s
nf-test (modules/nf-core/salmon/index, conda)	3m 8s
nf-test (modules/nf-core/salmon/index, conda)	3m 8s
nf-test (modules/nf-core/salmon/index, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/salmon/index, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/salmon/index, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/salmon/index, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/salmon/index, singularity)	1m 38s
nf-test (modules/nf-core/salmon/index, singularity)	1m 38s
nf-test (modules/nf-core/salmon/index, singularity)	1m 38s
nf-test (modules/nf-core/salmon/index, singularity)	1m 38s
nf-test (modules/nf-core/picard/fastqtosam, conda)	6m 3s
nf-test (modules/nf-core/picard/fastqtosam, conda)	6m 3s
nf-test (modules/nf-core/picard/fastqtosam, conda)	6m 3s
nf-test (modules/nf-core/picard/fastqtosam, conda)	6m 3s
nf-test (modules/nf-core/picard/fastqtosam, docker_self_hosted)	3m 52s
nf-test (modules/nf-core/picard/fastqtosam, docker_self_hosted)	3m 52s
nf-test (modules/nf-core/picard/fastqtosam, docker_self_hosted)	3m 52s
nf-test (modules/nf-core/picard/fastqtosam, docker_self_hosted)	3m 52s
nf-test (modules/nf-core/picard/fastqtosam, singularity)	7m 23s
nf-test (modules/nf-core/picard/fastqtosam, singularity)	7m 23s
nf-test (modules/nf-core/picard/fastqtosam, singularity)	7m 23s
nf-test (modules/nf-core/picard/fastqtosam, singularity)	7m 23s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, conda)	3m 51s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, conda)	3m 51s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, conda)	3m 51s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, conda)	3m 51s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, docker_self_hosted)	1m 57s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, docker_self_hosted)	1m 57s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, docker_self_hosted)	1m 57s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, docker_self_hosted)	1m 57s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, singularity)	1m 29s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, singularity)	1m 29s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, singularity)	1m 29s
nf-test (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig, singularity)	1m 29s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)	5m 38s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)	5m 23s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)	5m 9s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)	4m 34s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)	2m 35s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)	2m 35s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)	2m 35s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)	2m 35s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)	1s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)	5m 49s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)	5m 49s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)	5m 49s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, conda)	18m 36s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, conda)	18m 36s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, conda)	18m 36s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, conda)	18m 36s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, docker_self_hosted)	1s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, docker_self_hosted)	9m 32s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, docker_self_hosted)	9m 32s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, docker_self_hosted)	9m 32s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, singularity)	8m 52s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, singularity)	8m 52s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, singularity)	8m 52s
nf-test (subworkflows/nf-core/quantify_pseudo_alignment, singularity)	8m 52s
nf-test (modules/nf-core/picard/createsequencedictionary, conda)	4m 50s
nf-test (modules/nf-core/picard/createsequencedictionary, conda)	4m 50s
nf-test (modules/nf-core/picard/createsequencedictionary, conda)	4m 50s
nf-test (modules/nf-core/picard/createsequencedictionary, conda)	4m 50s
nf-test (modules/nf-core/picard/createsequencedictionary, docker_self_hosted)	2m 38s
nf-test (modules/nf-core/picard/createsequencedictionary, docker_self_hosted)	2m 38s
nf-test (modules/nf-core/picard/createsequencedictionary, docker_self_hosted)	2m 38s
nf-test (modules/nf-core/picard/createsequencedictionary, docker_self_hosted)	2m 38s
nf-test (modules/nf-core/picard/createsequencedictionary, singularity)	4m 33s
nf-test (modules/nf-core/picard/createsequencedictionary, singularity)	4m 33s
nf-test (modules/nf-core/picard/createsequencedictionary, singularity)	4m 33s
nf-test (modules/nf-core/picard/createsequencedictionary, singularity)	4m 33s
nf-test (modules/nf-core/picard/mergesamfiles, conda)	4m 37s
nf-test (modules/nf-core/picard/mergesamfiles, conda)	4m 37s
nf-test (modules/nf-core/picard/mergesamfiles, conda)	4m 37s
nf-test (modules/nf-core/picard/mergesamfiles, conda)	4m 37s
nf-test (modules/nf-core/picard/mergesamfiles, docker_self_hosted)	3m 2s
nf-test (modules/nf-core/picard/mergesamfiles, docker_self_hosted)	3m 2s
nf-test (modules/nf-core/picard/mergesamfiles, docker_self_hosted)	3m 2s
nf-test (modules/nf-core/picard/mergesamfiles, docker_self_hosted)	3m 2s
nf-test (modules/nf-core/picard/mergesamfiles, singularity)	4m 41s
nf-test (modules/nf-core/picard/mergesamfiles, singularity)	4m 41s
nf-test (modules/nf-core/picard/mergesamfiles, singularity)	4m 41s
nf-test (modules/nf-core/picard/mergesamfiles, singularity)	4m 41s
nf-test (modules/nf-core/picard/scatterintervalsbyns, conda)	3m 45s
nf-test (modules/nf-core/picard/scatterintervalsbyns, conda)	3m 45s
nf-test (modules/nf-core/picard/scatterintervalsbyns, conda)	3m 45s
nf-test (modules/nf-core/picard/scatterintervalsbyns, conda)	3m 45s
nf-test (modules/nf-core/picard/scatterintervalsbyns, docker_self_hosted)	2m 39s
nf-test (modules/nf-core/picard/scatterintervalsbyns, docker_self_hosted)	2m 39s
nf-test (modules/nf-core/picard/scatterintervalsbyns, docker_self_hosted)	2m 39s
nf-test (modules/nf-core/picard/scatterintervalsbyns, docker_self_hosted)	2m 39s
nf-test (modules/nf-core/picard/scatterintervalsbyns, singularity)	6m 20s
nf-test (modules/nf-core/picard/scatterintervalsbyns, singularity)	6m 20s
nf-test (modules/nf-core/picard/scatterintervalsbyns, singularity)	6m 20s
nf-test (modules/nf-core/picard/scatterintervalsbyns, singularity)	6m 20s
nf-test (modules/nf-core/picard/crosscheckfingerprints, conda)	4m 26s
nf-test (modules/nf-core/picard/crosscheckfingerprints, conda)	4m 26s
nf-test (modules/nf-core/picard/crosscheckfingerprints, conda)	4m 26s
nf-test (modules/nf-core/picard/crosscheckfingerprints, conda)	4m 26s
nf-test (modules/nf-core/picard/crosscheckfingerprints, docker_self_hosted)	3m 29s
nf-test (modules/nf-core/picard/crosscheckfingerprints, docker_self_hosted)	3m 29s
nf-test (modules/nf-core/picard/crosscheckfingerprints, docker_self_hosted)	3m 29s
nf-test (modules/nf-core/picard/crosscheckfingerprints, docker_self_hosted)	3m 29s
nf-test (modules/nf-core/picard/crosscheckfingerprints, singularity)	3m 35s
nf-test (modules/nf-core/picard/crosscheckfingerprints, singularity)	3m 35s
nf-test (modules/nf-core/picard/crosscheckfingerprints, singularity)	3m 35s
nf-test (modules/nf-core/picard/crosscheckfingerprints, singularity)	3m 35s
nf-test (modules/nf-core/picard/sortvcf, conda)	1s
nf-test (modules/nf-core/picard/sortvcf, conda)	3m 41s
nf-test (modules/nf-core/picard/sortvcf, conda)	3m 41s
nf-test (modules/nf-core/picard/sortvcf, conda)	3m 41s
nf-test (modules/nf-core/picard/sortvcf, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/sortvcf, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/sortvcf, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/sortvcf, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/sortvcf, singularity)	4m 30s
nf-test (modules/nf-core/picard/sortvcf, singularity)	4m 30s
nf-test (modules/nf-core/picard/sortvcf, singularity)	4m 30s
nf-test (modules/nf-core/picard/sortvcf, singularity)	4m 30s
nf-test (modules/nf-core/tximeta/tximport, conda)	9m 31s
nf-test (modules/nf-core/tximeta/tximport, conda)	9m 31s
nf-test (modules/nf-core/tximeta/tximport, conda)	9m 31s
nf-test (modules/nf-core/tximeta/tximport, conda)	9m 31s
nf-test (modules/nf-core/tximeta/tximport, docker_self_hosted)	4m 13s
nf-test (modules/nf-core/tximeta/tximport, docker_self_hosted)	4m 13s
nf-test (modules/nf-core/tximeta/tximport, docker_self_hosted)	4m 13s
nf-test (modules/nf-core/tximeta/tximport, docker_self_hosted)	4m 13s
nf-test (modules/nf-core/tximeta/tximport, singularity)	5m 31s
nf-test (modules/nf-core/tximeta/tximport, singularity)	5m 31s
nf-test (modules/nf-core/tximeta/tximport, singularity)	5m 31s
nf-test (modules/nf-core/tximeta/tximport, singularity)	5m 31s
nf-test (modules/nf-core/picard/collectmultiplemetrics, conda)	47s
nf-test (modules/nf-core/picard/collectmultiplemetrics, conda)	4m 2s
nf-test (modules/nf-core/picard/collectmultiplemetrics, conda)	4m 2s
nf-test (modules/nf-core/picard/collectmultiplemetrics, conda)	4m 2s
nf-test (modules/nf-core/picard/collectmultiplemetrics, docker_self_hosted)	3m 16s
nf-test (modules/nf-core/picard/collectmultiplemetrics, docker_self_hosted)	3m 16s
nf-test (modules/nf-core/picard/collectmultiplemetrics, docker_self_hosted)	3m 16s
nf-test (modules/nf-core/picard/collectmultiplemetrics, docker_self_hosted)	3m 16s
nf-test (modules/nf-core/picard/collectmultiplemetrics, singularity)	5m 15s
nf-test (modules/nf-core/picard/collectmultiplemetrics, singularity)	5m 15s
nf-test (modules/nf-core/picard/collectmultiplemetrics, singularity)	5m 15s
nf-test (modules/nf-core/picard/collectmultiplemetrics, singularity)	5m 15s
nf-test (modules/nf-core/stringtie/merge, conda)	4m 19s
nf-test (modules/nf-core/stringtie/merge, conda)	4m 19s
nf-test (modules/nf-core/stringtie/merge, conda)	4m 19s
nf-test (modules/nf-core/stringtie/merge, conda)	4m 19s
nf-test (modules/nf-core/stringtie/merge, docker_self_hosted)	2m 13s
nf-test (modules/nf-core/stringtie/merge, docker_self_hosted)	2m 13s
nf-test (modules/nf-core/stringtie/merge, docker_self_hosted)	2m 13s
nf-test (modules/nf-core/stringtie/merge, docker_self_hosted)	2m 13s
nf-test (modules/nf-core/stringtie/merge, singularity)	1m 36s
nf-test (modules/nf-core/stringtie/merge, singularity)	1m 36s
nf-test (modules/nf-core/stringtie/merge, singularity)	1m 36s
nf-test (modules/nf-core/stringtie/merge, singularity)	1m 36s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, conda)	3m 29s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, conda)	3m 29s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, conda)	3m 29s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, conda)	3m 29s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, docker_self_hosted)	1m 13s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, docker_self_hosted)	1m 13s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, docker_self_hosted)	1m 13s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, docker_self_hosted)	1m 13s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, singularity)	1m 59s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, singularity)	1m 59s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, singularity)	1m 59s
nf-test (modules/nf-core/ucsc/bedgraphtobigwig, singularity)	1m 59s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)	1s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)	6m 55s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)	6m 55s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)	6m 55s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)	2m 52s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)	2m 52s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)	2m 52s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)	2m 52s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)	56s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)	3m 48s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)	3m 48s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)	3m 48s
nf-test (modules/nf-core/picard/cleansam, conda)	4m 41s
nf-test (modules/nf-core/picard/cleansam, conda)	4m 41s
nf-test (modules/nf-core/picard/cleansam, conda)	4m 41s
nf-test (modules/nf-core/picard/cleansam, conda)	4m 41s
nf-test (modules/nf-core/picard/cleansam, docker_self_hosted)	3m 5s
nf-test (modules/nf-core/picard/cleansam, docker_self_hosted)	3m 5s
nf-test (modules/nf-core/picard/cleansam, docker_self_hosted)	3m 5s
nf-test (modules/nf-core/picard/cleansam, docker_self_hosted)	3m 5s
nf-test (modules/nf-core/picard/cleansam, singularity)	1s
nf-test (modules/nf-core/picard/cleansam, singularity)	3m 12s
nf-test (modules/nf-core/picard/cleansam, singularity)	3m 12s
nf-test (modules/nf-core/picard/cleansam, singularity)	3m 12s
nf-test (modules/nf-core/salmon/quant, conda)	7m 0s
nf-test (modules/nf-core/salmon/quant, conda)	7m 0s
nf-test (modules/nf-core/salmon/quant, conda)	7m 0s
nf-test (modules/nf-core/salmon/quant, conda)	7m 0s
nf-test (modules/nf-core/salmon/quant, docker_self_hosted)	4m 2s
nf-test (modules/nf-core/salmon/quant, docker_self_hosted)	4m 2s
nf-test (modules/nf-core/salmon/quant, docker_self_hosted)	4m 2s
nf-test (modules/nf-core/salmon/quant, docker_self_hosted)	4m 2s
nf-test (modules/nf-core/salmon/quant, singularity)	3m 7s
nf-test (modules/nf-core/salmon/quant, singularity)	3m 7s
nf-test (modules/nf-core/salmon/quant, singularity)	3m 7s
nf-test (modules/nf-core/salmon/quant, singularity)	3m 7s
nf-test (modules/nf-core/picard/addorreplacereadgroups, conda)	5m 32s
nf-test (modules/nf-core/picard/addorreplacereadgroups, conda)	5m 32s
nf-test (modules/nf-core/picard/addorreplacereadgroups, conda)	5m 32s
nf-test (modules/nf-core/picard/addorreplacereadgroups, conda)	5m 32s
nf-test (modules/nf-core/picard/addorreplacereadgroups, docker_self_hosted)	4m 30s
nf-test (modules/nf-core/picard/addorreplacereadgroups, docker_self_hosted)	4m 30s
nf-test (modules/nf-core/picard/addorreplacereadgroups, docker_self_hosted)	4m 30s
nf-test (modules/nf-core/picard/addorreplacereadgroups, docker_self_hosted)	4m 30s
nf-test (modules/nf-core/picard/addorreplacereadgroups, singularity)	1s
nf-test (modules/nf-core/picard/addorreplacereadgroups, singularity)	7m 35s
nf-test (modules/nf-core/picard/addorreplacereadgroups, singularity)	7m 35s
nf-test (modules/nf-core/picard/addorreplacereadgroups, singularity)	7m 35s
nf-test (modules/nf-core/elprep/fastatoelfasta, conda)	3m 10s
nf-test (modules/nf-core/elprep/fastatoelfasta, conda)	3m 10s
nf-test (modules/nf-core/elprep/fastatoelfasta, conda)	3m 10s
nf-test (modules/nf-core/elprep/fastatoelfasta, conda)	3m 10s
nf-test (modules/nf-core/elprep/fastatoelfasta, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/elprep/fastatoelfasta, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/elprep/fastatoelfasta, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/elprep/fastatoelfasta, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/elprep/fastatoelfasta, singularity)	1m 31s
nf-test (modules/nf-core/elprep/fastatoelfasta, singularity)	1m 15s
nf-test (modules/nf-core/elprep/fastatoelfasta, singularity)	1m 15s
nf-test (modules/nf-core/elprep/fastatoelfasta, singularity)	1m 15s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, conda)	4m 54s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, conda)	4m 54s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, conda)	4m 54s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, conda)	4m 54s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, docker_self_hosted)	2m 16s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, docker_self_hosted)	2m 32s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, docker_self_hosted)	2m 32s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, docker_self_hosted)	2m 32s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, singularity)	2m 53s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, singularity)	2m 33s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, singularity)	2m 33s
nf-test (modules/nf-core/picard/collectinsertsizemetrics, singularity)	2m 33s
nf-test (modules/nf-core/svdb/merge, conda)	9m 33s
nf-test (modules/nf-core/svdb/merge, conda)	9m 33s
nf-test (modules/nf-core/svdb/merge, conda)	9m 33s
nf-test (modules/nf-core/svdb/merge, conda)	9m 33s
nf-test (modules/nf-core/svdb/merge, docker_self_hosted)	4m 45s
nf-test (modules/nf-core/svdb/merge, docker_self_hosted)	4m 45s
nf-test (modules/nf-core/svdb/merge, docker_self_hosted)	4m 45s
nf-test (modules/nf-core/svdb/merge, docker_self_hosted)	4m 45s
nf-test (modules/nf-core/svdb/merge, singularity)	5m 2s
nf-test (modules/nf-core/svdb/merge, singularity)	5m 2s
nf-test (modules/nf-core/svdb/merge, singularity)	5m 2s
nf-test (modules/nf-core/svdb/merge, singularity)	5m 2s
nf-test (modules/nf-core/custom/getchromsizes, conda)	4m 30s
nf-test (modules/nf-core/custom/getchromsizes, conda)	3m 52s
nf-test (modules/nf-core/custom/getchromsizes, conda)	3m 52s
nf-test (modules/nf-core/custom/getchromsizes, conda)	3m 52s
nf-test (modules/nf-core/custom/getchromsizes, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/custom/getchromsizes, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/custom/getchromsizes, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/custom/getchromsizes, docker_self_hosted)	1m 45s
nf-test (modules/nf-core/custom/getchromsizes, singularity)	2m 31s
nf-test (modules/nf-core/custom/getchromsizes, singularity)	2m 31s
nf-test (modules/nf-core/custom/getchromsizes, singularity)	2m 31s
nf-test (modules/nf-core/custom/getchromsizes, singularity)	2m 31s
nf-test (modules/nf-core/picard/liftovervcf, conda)	5m 25s
nf-test (modules/nf-core/picard/liftovervcf, conda)	5m 25s
nf-test (modules/nf-core/picard/liftovervcf, conda)	5m 25s
nf-test (modules/nf-core/picard/liftovervcf, conda)	5m 25s
nf-test (modules/nf-core/picard/liftovervcf, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/picard/liftovervcf, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/picard/liftovervcf, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/picard/liftovervcf, docker_self_hosted)	2m 48s
nf-test (modules/nf-core/picard/liftovervcf, singularity)	1m 25s
nf-test (modules/nf-core/picard/liftovervcf, singularity)	6m 24s
nf-test (modules/nf-core/picard/liftovervcf, singularity)	6m 24s
nf-test (modules/nf-core/picard/liftovervcf, singularity)	6m 24s
nf-test (modules/nf-core/picard/collectwgsmetrics, conda)	5m 9s
nf-test (modules/nf-core/picard/collectwgsmetrics, conda)	5m 9s
nf-test (modules/nf-core/picard/collectwgsmetrics, conda)	5m 9s
nf-test (modules/nf-core/picard/collectwgsmetrics, conda)	5m 9s
nf-test (modules/nf-core/picard/collectwgsmetrics, docker_self_hosted)	2m 57s
nf-test (modules/nf-core/picard/collectwgsmetrics, docker_self_hosted)	2m 57s
nf-test (modules/nf-core/picard/collectwgsmetrics, docker_self_hosted)	2m 57s
nf-test (modules/nf-core/picard/collectwgsmetrics, docker_self_hosted)	2m 57s
nf-test (modules/nf-core/picard/collectwgsmetrics, singularity)	4m 31s
nf-test (modules/nf-core/picard/collectwgsmetrics, singularity)	4m 31s
nf-test (modules/nf-core/picard/collectwgsmetrics, singularity)	4m 31s
nf-test (modules/nf-core/picard/collectwgsmetrics, singularity)	4m 31s
nf-test (modules/nf-core/picard/fixmateinformation, conda)	3m 46s
nf-test (modules/nf-core/picard/fixmateinformation, conda)	3m 46s
nf-test (modules/nf-core/picard/fixmateinformation, conda)	3m 46s
nf-test (modules/nf-core/picard/fixmateinformation, conda)	3m 46s
nf-test (modules/nf-core/picard/fixmateinformation, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/fixmateinformation, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/fixmateinformation, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/fixmateinformation, docker_self_hosted)	2m 15s
nf-test (modules/nf-core/picard/fixmateinformation, singularity)	3m 12s
nf-test (modules/nf-core/picard/fixmateinformation, singularity)	3m 12s
nf-test (modules/nf-core/picard/fixmateinformation, singularity)	3m 12s
nf-test (modules/nf-core/picard/fixmateinformation, singularity)	3m 12s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, conda)	1s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, conda)	4m 2s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, conda)	4m 2s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, conda)	4m 2s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, docker_self_hosted)	2m 1s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, docker_self_hosted)	2m 1s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, docker_self_hosted)	2m 1s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, docker_self_hosted)	2m 1s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, singularity)	2m 25s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, singularity)	2m 25s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, singularity)	2m 25s
nf-test (subworkflows/nf-core/fastq_subsample_fq_salmon, singularity)	2m 25s
nf-test (modules/nf-core/bedtools/split, conda)	1m 34s
nf-test (modules/nf-core/bedtools/split, conda)	2m 10s
nf-test (modules/nf-core/bedtools/split, conda)	2m 10s
nf-test (modules/nf-core/bedtools/split, conda)	2m 10s
nf-test (modules/nf-core/bedtools/split, docker_self_hosted)	1m 2s
nf-test (modules/nf-core/bedtools/split, docker_self_hosted)	1m 2s
nf-test (modules/nf-core/bedtools/split, docker_self_hosted)	1m 2s
nf-test (modules/nf-core/bedtools/split, docker_self_hosted)	1m 2s
nf-test (modules/nf-core/bedtools/split, singularity)	1m 40s
nf-test (modules/nf-core/bedtools/split, singularity)	1m 40s
nf-test (modules/nf-core/bedtools/split, singularity)	1m 40s
nf-test (modules/nf-core/bedtools/split, singularity)	1m 40s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)	1s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)	10m 3s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)	10m 3s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)	10m 3s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)	5m 49s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)	5m 49s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)	5m 49s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)	5m 49s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)	4m 54s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)	4m 54s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)	4m 54s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)	4m 54s
nf-test (modules/nf-core/picard/renamesampleinvcf, conda)	3m 49s
nf-test (modules/nf-core/picard/renamesampleinvcf, conda)	3m 49s
nf-test (modules/nf-core/picard/renamesampleinvcf, conda)	3m 49s
nf-test (modules/nf-core/picard/renamesampleinvcf, conda)	3m 49s
nf-test (modules/nf-core/picard/renamesampleinvcf, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/renamesampleinvcf, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/renamesampleinvcf, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/renamesampleinvcf, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/picard/renamesampleinvcf, singularity)	3m 8s
nf-test (modules/nf-core/picard/renamesampleinvcf, singularity)	3m 8s
nf-test (modules/nf-core/picard/renamesampleinvcf, singularity)	3m 8s
nf-test (modules/nf-core/picard/renamesampleinvcf, singularity)	3m 8s
confirm-pass	2s
confirm-pass	4s
confirm-pass	2s
confirm-pass	4s
	1d 18h 23m 51s

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Update some module versions #16042

Usage

Update some module versions #16042

Jobs

Run details

Run time