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Add nf-test to vcf_annotation_ensemblvep_snpeff + some general fixes #16006

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Add nf-test to vcf_annotation_ensemblvep_snpeff + some general fixes

Add nf-test to vcf_annotation_ensemblvep_snpeff + some general fixes #16006

Triggered via pull request October 18, 2024 08:48
@nvnieuwknvnieuwk
synchronize #6779
nvnieuwk:update-annotation-subwf
Status Cancelled
Total duration 7m 25s
Artifacts –

test.yml

on: pull_request
nf-test-changes
31s
nf-test-changes
pytest-changes
4s
pytest-changes
prettier
32s
prettier
editorconfig
11s
editorconfig
pre-commit
41s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
confirm-pass
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6 errors and 2 warnings
nf-test (subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff, singularity)
Canceling since a higher priority waiting request for 'Run tests-6779' exists
nf-test (subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff, singularity)
The operation was canceled.
nf-test (subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6779' exists
nf-test (subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff, docker_self_hosted)
The operation was canceled.
nf-test (subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff, conda)
Canceling since a higher priority waiting request for 'Run tests-6779' exists
nf-test (subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff, conda)
The operation was canceled.
pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.