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Limma mixed models feature #15934

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Limma mixed models feature

Limma mixed models feature #15934

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Job Run time
editorconfig
13s
prettier
30s
pre-commit
1m 29s
pytest-changes
9s
nf-test-changes
2m 47s
pytest (limma/differential, conda)
4m 1s
pytest (limma/differential, docker)
6m 58s
pytest (limma/differential, singularity)
14m 50s
nf-core-lint-modules (fastq_fastqc_umitools_fastp)
54s
nf-core-lint-modules (utils_nextflow_pipeline)
46s
nf-core-lint-modules (bam_sort_stats_samtools)
47s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)
49s
nf-core-lint-modules (utils_nfvalidation_plugin)
53s
nf-core-lint-modules (utils_nfcore_pipeline)
1m 1s
nf-core-lint-modules (fastq_align_star)
48s
nf-core-lint-modules (fastq_qc_trim_filter_setstrandedness)
46s
nf-core-lint-modules (bismark/report)
1m 24s
nf-core-lint-modules (openms/idmerger)
2m 3s
nf-core-lint-modules (openms/idripper)
1m 15s
nf-core-lint-modules (openms/idmassaccuracy)
1m 14s
nf-core-lint-modules (samtools/markdup)
2m 21s
nf-core-lint-modules (openmsthirdparty/cometadapter)
2m 38s
nf-core-lint-modules (maxbin2)
2m 5s
nf-core-lint-modules (openms/idscoreswitcher)
2m 11s
nf-core-lint-modules (bismark/align)
2m 8s
nf-core-lint-modules (openms/decoydatabase)
2m 12s
nf-core-lint-modules (spring/decompress)
2m 36s
nf-core-lint-modules (openms/peptideindexer)
2m 6s
nf-core-lint-modules (bismark/methylationextractor)
1m 18s
nf-core-lint-modules (spring/compress)
2m 8s
nf-core-lint-modules (bismark/coverage2cytosine)
2m 1s
nf-core-lint-modules (openms/peakpickerhires)
2m 8s
nf-core-lint-modules (bismark/deduplicate)
1m 12s
nf-core-lint-modules (ensemblvep/filtervep)
2m 4s
nf-core-lint-modules (openms/idfilter)
2m 3s
nf-core-lint-modules (tar)
2m 35s
nf-core-lint-modules (star/align)
1m 10s
nf-core-lint-modules (bismark/summary)
1m 17s
nf-core-lint-modules (samtools/sort)
2m 9s
nf-core-lint-modules (multiqc)
2m 5s
nf-core-lint-modules (velocyto)
2m 11s
nf-core-lint-modules (deepvariant/vcfstatsreport)
1m 7s
nf-core-lint-modules (limma/differentialvoom)
1m 22s
nf-core-lint-modules (centrifuge/build)
1m 18s
nf-core-lint-modules (bismark/genomepreparation)
1m 31s
nf-test (modules/nf-core/bismark/report, conda)
4m 28s
nf-test (modules/nf-core/bismark/report, docker_self_hosted)
2m 2s
nf-test (modules/nf-core/bismark/report, singularity)
3m 2s
nf-test (modules/nf-core/openms/idmerger, conda)
4m 47s
nf-test (modules/nf-core/openms/idmerger, docker_self_hosted)
2m 44s
nf-test (modules/nf-core/openms/idmerger, singularity)
2m 18s
nf-test (modules/nf-core/openms/idripper, conda)
6m 15s
nf-test (modules/nf-core/openms/idripper, docker_self_hosted)
3m 26s
nf-test (modules/nf-core/openms/idripper, singularity)
2m 24s
nf-test (modules/nf-core/openms/idmassaccuracy, conda)
15m 36s
nf-test (modules/nf-core/openms/idmassaccuracy, docker_self_hosted)
13m 26s
nf-test (modules/nf-core/openms/idmassaccuracy, singularity)
13m 24s
nf-test (modules/nf-core/samtools/markdup, conda)
3m 53s
nf-test (modules/nf-core/samtools/markdup, docker_self_hosted)
1m 44s
nf-test (modules/nf-core/samtools/markdup, singularity)
1m 34s
nf-test (modules/nf-core/openmsthirdparty/cometadapter, conda)
15m 7s
nf-test (modules/nf-core/openmsthirdparty/cometadapter, docker_self_hosted)
12m 53s
nf-test (modules/nf-core/openmsthirdparty/cometadapter, singularity)
15m 7s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, conda)
17m 27s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, docker_self_hosted)
10m 53s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, singularity)
10m 40s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, conda)
3m 49s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, docker_self_hosted)
2m 39s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, singularity)
3m 8s
nf-test (modules/nf-core/maxbin2, conda)
4m 33s
nf-test (modules/nf-core/maxbin2, docker_self_hosted)
2m 6s
nf-test (modules/nf-core/maxbin2, singularity)
3m 2s
nf-test (modules/nf-core/openms/idscoreswitcher, conda)
5m 19s
nf-test (modules/nf-core/openms/idscoreswitcher, docker_self_hosted)
3m 56s
nf-test (modules/nf-core/openms/idscoreswitcher, singularity)
2m 39s
nf-test (modules/nf-core/bismark/align, conda)
8m 33s
nf-test (modules/nf-core/bismark/align, docker_self_hosted)
3m 50s
nf-test (modules/nf-core/bismark/align, singularity)
5m 50s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, conda)
5m 50s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, docker_self_hosted)
2m 24s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, singularity)
3m 1s
nf-test (modules/nf-core/openms/decoydatabase, conda)
4m 33s
nf-test (modules/nf-core/openms/decoydatabase, docker_self_hosted)
2m 59s
nf-test (modules/nf-core/openms/decoydatabase, singularity)
2m 30s
nf-test (modules/nf-core/spring/decompress, conda)
4m 21s
nf-test (modules/nf-core/spring/decompress, docker_self_hosted)
2m 5s
nf-test (modules/nf-core/spring/decompress, singularity)
2m 49s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)
11m 0s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)
6m 44s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)
6m 2s
nf-test (modules/nf-core/openms/peptideindexer, conda)
6m 5s
nf-test (modules/nf-core/openms/peptideindexer, docker_self_hosted)
4m 7s
nf-test (modules/nf-core/openms/peptideindexer, singularity)
4m 16s
nf-test (subworkflows/nf-core/utils_nfvalidation_plugin, conda)
4m 8s
nf-test (subworkflows/nf-core/utils_nfvalidation_plugin, docker_self_hosted)
1m 56s
nf-test (subworkflows/nf-core/utils_nfvalidation_plugin, singularity)
2m 4s
nf-test (modules/nf-core/bismark/methylationextractor, conda)
4m 21s
nf-test (modules/nf-core/bismark/methylationextractor, docker_self_hosted)
2m 24s
nf-test (modules/nf-core/bismark/methylationextractor, singularity)
2m 45s
nf-test (modules/nf-core/spring/compress, conda)
5m 6s
nf-test (modules/nf-core/spring/compress, docker_self_hosted)
2m 47s
nf-test (modules/nf-core/spring/compress, singularity)
1m 58s
nf-test (subworkflows/nf-core/utils_nfcore_pipeline, conda)
4m 42s
nf-test (subworkflows/nf-core/utils_nfcore_pipeline, docker_self_hosted)
2m 40s
nf-test (subworkflows/nf-core/utils_nfcore_pipeline, singularity)
3m 16s
nf-test (modules/nf-core/bismark/coverage2cytosine, conda)
4m 9s
nf-test (modules/nf-core/bismark/coverage2cytosine, docker_self_hosted)
2m 38s
nf-test (modules/nf-core/bismark/coverage2cytosine, singularity)
2m 28s
nf-test (modules/nf-core/openms/peakpickerhires, conda)
4m 38s
nf-test (modules/nf-core/openms/peakpickerhires, docker_self_hosted)
3m 27s
nf-test (modules/nf-core/openms/peakpickerhires, singularity)
2m 16s
nf-test (modules/nf-core/bismark/deduplicate, conda)
4m 2s
nf-test (modules/nf-core/bismark/deduplicate, docker_self_hosted)
2m 41s
nf-test (modules/nf-core/bismark/deduplicate, singularity)
2m 28s
nf-test (modules/nf-core/ensemblvep/filtervep, conda)
7m 59s
nf-test (modules/nf-core/ensemblvep/filtervep, docker_self_hosted)
4m 1s
nf-test (modules/nf-core/ensemblvep/filtervep, singularity)
4m 7s
nf-test (modules/nf-core/openms/idfilter, conda)
4m 53s
nf-test (modules/nf-core/openms/idfilter, docker_self_hosted)
3m 8s
nf-test (modules/nf-core/openms/idfilter, singularity)
6m 12s
nf-test (modules/nf-core/tar, conda)
7m 2s
nf-test (modules/nf-core/tar, docker_self_hosted)
4m 7s
nf-test (modules/nf-core/tar, singularity)
4m 29s
nf-test (modules/nf-core/star/align, conda)
25m 23s
nf-test (modules/nf-core/star/align, docker_self_hosted)
21m 23s
nf-test (modules/nf-core/star/align, singularity)
21m 38s
nf-test (subworkflows/nf-core/fastq_align_star, conda)
12m 12s
nf-test (subworkflows/nf-core/fastq_align_star, docker_self_hosted)
8m 6s
nf-test (subworkflows/nf-core/fastq_align_star, singularity)
7m 58s
nf-test (modules/nf-core/bismark/summary, conda)
5m 14s
nf-test (modules/nf-core/bismark/summary, docker_self_hosted)
2m 3s
nf-test (modules/nf-core/bismark/summary, singularity)
3m 30s
nf-test (modules/nf-core/samtools/sort, conda)
5m 42s
nf-test (modules/nf-core/samtools/sort, docker_self_hosted)
3m 12s
nf-test (modules/nf-core/samtools/sort, singularity)
3m 17s
nf-test (modules/nf-core/multiqc, conda)
7m 51s
nf-test (modules/nf-core/multiqc, docker_self_hosted)
4m 3s
nf-test (modules/nf-core/multiqc, singularity)
5m 3s
nf-test (modules/nf-core/velocyto, conda)
6m 48s
nf-test (modules/nf-core/velocyto, docker_self_hosted)
3m 23s
nf-test (modules/nf-core/velocyto, singularity)
4m 16s
nf-test (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness, conda)
6m 38s
nf-test (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness, docker_self_hosted)
5m 4s
nf-test (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness, singularity)
6m 41s
nf-test (modules/nf-core/deepvariant/vcfstatsreport, docker_self_hosted)
10m 1s
nf-test (modules/nf-core/deepvariant/vcfstatsreport, singularity)
15m 31s
nf-test (modules/nf-core/limma/differentialvoom, conda)
4m 33s
nf-test (modules/nf-core/limma/differentialvoom, docker_self_hosted)
2m 32s
nf-test (modules/nf-core/limma/differentialvoom, singularity)
2m 29s
nf-test (modules/nf-core/centrifuge/build, conda)
3m 56s
nf-test (modules/nf-core/centrifuge/build, docker_self_hosted)
2m 24s
nf-test (modules/nf-core/centrifuge/build, singularity)
2m 14s
nf-test (modules/nf-core/bismark/genomepreparation, conda)
6m 6s
nf-test (modules/nf-core/bismark/genomepreparation, docker_self_hosted)
2m 24s
nf-test (modules/nf-core/bismark/genomepreparation, singularity)
2m 27s
confirm-pass
1s
11h 49m 48s