Comment out unusued tempalte parmaeter (renaming), and remove a dupli…

…cate entry in schema
nf-core · Oct 16, 2024 · 2af46d8 · 2af46d8
1 parent 63fe6a2
commit 2af46d8
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Showing 2 changed files with 1 addition and 9 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -150,7 +150,7 @@ params {
     save_mmseqs_db                       = false
 
     // References
-    genome                     = null
+    //genome                     = null // we use --host_genome instead
     igenomes_base              = 's3://ngi-igenomes/igenomes/'
     igenomes_ignore            = false
 

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -66,14 +66,6 @@
             "fa_icon": "fas fa-dna",
             "description": "Reference genome related files and options required for the workflow.",
             "properties": {
-                "igenomes_base": {
-                    "type": "string",
-                    "format": "directory-path",
-                    "description": "Directory / URL base for iGenomes references.",
-                    "default": "s3://ngi-igenomes/igenomes/",
-                    "fa_icon": "fas fa-cloud-download-alt",
-                    "hidden": true
-                },
                 "igenomes_ignore": {
                     "type": "boolean",
                     "description": "Do not load the iGenomes reference config.",