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Allow local databases to be used for kraken2, centrifuge, and busco #1299

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Allow local databases to be used for kraken2, centrifuge, and busco

Allow local databases to be used for kraken2, centrifuge, and busco #1299

Triggered via pull request October 5, 2023 23:53
@gregorysprengergregorysprenger
synchronize #504
gregorysprenger:add_local_db
Status Cancelled
Total duration 7m 58s
Artifacts –

ci.yml

on: pull_request
Run single test to checkm due to database download
7m 47s
Run single test to checkm due to database download
Matrix: Run workflow profile
Matrix: Run pipeline with test data
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13 errors and 9 warnings
Run pipeline with test data (latest-everything)
Canceling since a higher priority waiting request for 'nf-core CI-504' exists
Run pipeline with test data (latest-everything)
The operation was canceled.
Run pipeline with test data (23.04.0)
Canceling since a higher priority waiting request for 'nf-core CI-504' exists
Run pipeline with test data (23.04.0)
The operation was canceled.
Run workflow profile (test_adapterremoval)
The operation was canceled.
Run workflow profile (test_virus_identification)
The operation was canceled.
Run workflow profile (test_host_rm)
The operation was canceled.
Run workflow profile (test_hybrid_host_rm)
The operation was canceled.
Run workflow profile (test_ancient_dna)
The operation was canceled.
Run single test to checkm due to database download
The operation was canceled.
Run workflow profile (test_binrefinement)
The operation was canceled.
Run workflow profile (test_busco_auto)
The operation was canceled.
Run workflow profile (test_hybrid)
The operation was canceled.
Run workflow profile (test_adapterremoval)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_virus_identification)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_host_rm)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_hybrid_host_rm)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_ancient_dna)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run single test to checkm due to database download
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_busco_auto)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_binrefinement)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_hybrid)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/