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Some linting cleanup (mostly fixing local modules to be more nf-core compliant) #1752

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Some linting cleanup (mostly fixing local modules to be more nf-core compliant)

Some linting cleanup (mostly fixing local modules to be more nf-core compliant) #1752

Triggered via pull request October 14, 2024 16:16
@jfy133jfy133
synchronize #693
linting-cleanup
Status Failure
Total duration 47m 37s
Artifacts –

ci.yml

on: pull_request
Run single test to checkm due to database download
47m 12s
Run single test to checkm due to database download
Matrix: Run workflow profile
Matrix: Run pipeline with test data
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21 errors and 6 warnings
Run workflow profile (test_binrefinement)
Process completed with exit code 1.
Run workflow profile (test_concoct)
Process completed with exit code 1.
Run workflow profile (test_ancient_dna)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_ancient_dna)
Process completed with exit code 1.
Run workflow profile (test_virus_identification)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_virus_identification)
Process completed with exit code 1.
Run workflow profile (test_single_end)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_single_end)
Process completed with exit code 1.
Run workflow profile (test_hybrid_host_rm)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_hybrid_host_rm)
Process completed with exit code 1.
Run workflow profile (test_busco_auto)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_busco_auto)
Process completed with exit code 1.
Run workflow profile (test_host_rm)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_host_rm)
Process completed with exit code 1.
Run workflow profile (test_adapterremoval)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_adapterremoval)
Process completed with exit code 1.
Run workflow profile (test_hybrid)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_hybrid)
The operation was canceled.
Run pipeline with test data (23.04.0)
Process completed with exit code 1.
Run pipeline with test data (latest-everything)
The job was canceled because "_23_04_0" failed.
Run single test to checkm due to database download
Process completed with exit code 4.
Run workflow profile (test_binrefinement)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_binrefinement)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow profile (test_concoct)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_concoct)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run single test to checkm due to database download
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run single test to checkm due to database download
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/