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Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs #1736

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Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs

Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs #1736

Triggered via pull request October 10, 2024 13:44
@jasmezzjasmezz
synchronize #688
vagkaratzas:samplsheet-for-taxprofiler
Status Failure
Total duration 19m 12s
Artifacts –

ci.yml

on: pull_request
Run single test to checkm due to database download
16m 13s
Run single test to checkm due to database download
Matrix: Run workflow profile
Matrix: Run pipeline with test data
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19 errors and 4 warnings
Run workflow profile (test_binrefinement)
Process completed with exit code 1.
Run workflow profile (test_concoct)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_concoct)
The operation was canceled.
Run workflow profile (test_host_rm)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_host_rm)
The operation was canceled.
Run workflow profile (test_virus_identification)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_virus_identification)
The operation was canceled.
Run workflow profile (test_adapterremoval)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_adapterremoval)
The operation was canceled.
Run workflow profile (test_busco_auto)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_busco_auto)
The operation was canceled.
Run workflow profile (test_hybrid_host_rm)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_hybrid_host_rm)
The operation was canceled.
Run workflow profile (test_hybrid)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_hybrid)
The operation was canceled.
Run workflow profile (test_ancient_dna)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_ancient_dna)
The operation was canceled.
Run workflow profile (test_single_end)
The job was canceled because "test_binrefinement" failed.
Run workflow profile (test_single_end)
The operation was canceled.
Run workflow profile (test_binrefinement)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow profile (test_binrefinement)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run single test to checkm due to database download
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run single test to checkm due to database download
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/