318 update for tes compliance #1026
GitHub Actions / JUnit Test Report
failed
Sep 17, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
github-actions / JUnit Test Report
nf.Parameters: --nf_core_pipeline rnaseq
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-47ba6ce2b9d272e12d6a519c81aeca6a.nf` [berserk_crick] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[f6/b96288] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[c5/a87e56] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[60/609e61] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[90/e8c0b1] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[02/d3f77b] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[bc/dc4654] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[4c/b896e3] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[44/d97fab] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[93/898481] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[cd/6d6864] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[fc/e4e571] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[00/6fe75e] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[7e/74ef65] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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