Workflow output definition

output_schema.json

@@ -0,0 +1,125 @@
+{
+    "$schema": "http://json-schema.org/draft-07/schema",
+    "$id": "https://raw.githubusercontent.com/nf-core/fetchngs/master/output_schema.json",
+    "title": "nf-core/fetchngs pipeline outputs",
+    "description": "",
+    "type": "object",
+    "properties": {
+        "fastq": {
+            "type": "array",
+            "items": {
+                "type": "object",
+                "properties": {
+                    "sample": {
+                        "type": "string"
+                    },
+                    "fastq_1": {
+                        "type": "string",
+                        "format": "file-path",
+                        "pattern": "^\\S+\\.f(ast)?q\\.gz$"
+                    },
+                    "fastq_2": {
+                        "type": "string",
+                        "format": "file-path",
+                        "pattern": "^\\S+\\.f(ast)?q\\.gz$"
+                    },
+                    "run_accession": {
+                        "type": "string"
+                    },
+                    "experiment_accession": {
+                        "type": "string"
+                    },
+                    "sample_accession": {
+                        "type": "string"
+                    },
+                    "secondary_sample_accession": {
+                        "type": "string"
+                    },
+                    "study_accession": {
+                        "type": "string"
+                    },
+                    "secondary_study_accession": {
+                        "type": "string"
+                    },
+                    "submission_accession": {
+                        "type": "string"
+                    },
+                    "run_alias": {
+                        "type": "string"
+                    },
+                    "experiment_alias": {
+                        "type": "string"
+                    },
+                    "sample_alias": {
+                        "type": "string"
+                    },
+                    "study_alias": {
+                        "type": "string"
+                    },
+                    "library_layout": {
+                        "type": "string"
+                    },
+                    "library_selection": {
+                        "type": "string"
+                    },
+                    "library_source": {
+                        "type": "string"
+                    },
+                    "library_strategy": {
+                        "type": "string"
+                    },
+                    "library_name": {
+                        "type": "string"
+                    },
+                    "instrument_model": {
+                        "type": "string"
+                    },
+                    "instrument_platform": {
+                        "type": "string"
+                    },
+                    "base_count": {
+                        "type": "integer"
+                    },
+                    "read_count": {
+                        "type": "integer"
+                    },
+                    "tax_id": {
+                        "type": "string"
+                    },
+                    "scientific_name": {
+                        "type": "string"
+                    },
+                    "sample_title": {
+                        "type": "string"
+                    },
+                    "experiment_title": {
+                        "type": "string"
+                    },
+                    "study_title": {
+                        "type": "string"
+                    },
+                    "sample_description": {
+                        "type": "string"
+                    },
+                    "fastq_md5": {
+                        "type": "string",
+                        "pattern": "^[0-9a-f]{32}$"
+                    },
+                    "fastq_bytes": {
+                        "type": "integer"
+                    },
+                    "fastq_ftp": {
+                        "type": "string"
+                    },
+                    "fastq_galaxy": {
+                        "type": "string"
+                    },
+                    "fastq_aspera": {
+                        "type": "string"
+                    }
+                },
+                "required": ["sample", "fastq_1"]
+            }
+        }
+    }
+}