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use subworkflows/local/bam_bedgraph_bigwig_bedtools_ucsc from nf-core… #622

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use subworkflows/local/bam_bedgraph_bigwig_bedtools_ucsc from nf-core…

use subworkflows/local/bam_bedgraph_bigwig_bedtools_ucsc from nf-core… #622

Triggered via pull request July 5, 2024 08:21
@bjlangbjlang
synchronize #399
bjlang:dev
Status Failure
Total duration 2m 29s
Artifacts –

ci.yml

on: pull_request
Matrix: Test available aligners
Matrix: Test workflow parameters
Matrix: Run pipeline with test data
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10 errors and 4 warnings
Test available aligners (bowtie2)
Process completed with exit code 1.
Test available aligners (chromap)
The job was canceled because "bowtie2" failed.
Test available aligners (chromap)
Process completed with exit code 1.
Test workflow parameters (--skip_trimming)
Process completed with exit code 1.
Test workflow parameters (--skip_consensus_peaks)
The job was canceled because "_--skip_trimming" failed.
Test workflow parameters (--skip_consensus_peaks)
Process completed with exit code 1.
Test available aligners (star)
The job was canceled because "bowtie2" failed.
Test available aligners (star)
The operation was canceled.
Run pipeline with test data (latest-everything)
Process completed with exit code 1.
Run pipeline with test data (23.04.0)
The job was canceled because "latest-everything" failed.
Test available aligners (bowtie2)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test available aligners (bowtie2)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Test workflow parameters (--skip_trimming)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test workflow parameters (--skip_trimming)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/