Merge pull request #347 from mapo9/bump_cellranger

bump cellranger version
nf-core · Sep 30, 2024 · 0e0b1ac · 0e0b1ac
2 parents 91777ac + 11ed769
commit 0e0b1ac
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Showing 6 changed files with 44 additions and 34 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -81,7 +81,7 @@ jobs:
 
       - name: Upload logs on failure
         if: failure()
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: logs-${{ matrix.profile }}
           path: |

diff --git a/.github/workflows/ci_immcantation.yml b/.github/workflows/ci_immcantation.yml
@@ -44,7 +44,7 @@ jobs:
 
       - name: Upload logs on failure
         if: failure()
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: logs-${{ matrix.profile }}
           path: |

diff --git a/modules.json b/modules.json
@@ -17,7 +17,7 @@
                     },
                     "cellranger/vdj": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "fastp": {

diff --git a/modules/nf-core/cellranger/vdj/environment.yml b/modules/nf-core/cellranger/vdj/environment.yml
diff --git a/modules/nf-core/cellranger/vdj/main.nf b/modules/nf-core/cellranger/vdj/main.nf
diff --git a/modules/nf-core/cellranger/vdj/meta.yml b/modules/nf-core/cellranger/vdj/meta.yml