Run Nextclade on all 8 genes for H1 and H3 #185
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Adds remaining gene segments to the default list of segments to process with Nextclade. Since B/Vic only has HA and NA Nextclades datasets right now, this commit modifies the logic of the workflow to look for a build-specific list of segments and defines that list for the Vic build.
Not all gene segments define shorter aliases (e.g., "flu_h3n2_ha"), so we need to use the full names (e.g., "nextstrain/flu/h3n2/ha") to download each dataset.
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Description of proposed changes
Adds remaining gene segments to the default list of segments to process with Nextclade. Since B/Vic only has HA and NA Nextclades datasets right now, this commit modifies the logic of the workflow to look for a build-specific list of segments and defines that list for the Vic build.
Related issue(s)
Follows from #183
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