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chore: release 2024-01-16--20-31-02Z
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Updated datasets:

- nextstrain/sars-cov-2/wuhan-hu-1/orfs (SARS-CoV-2)
- nextstrain/sars-cov-2/wuhan-hu-1/proteins (SARS-CoV-2 (Mature proteins))
- nextstrain/sars-cov-2/BA.2 (SARS-CoV-2 (BA.2))
- nextstrain/sars-cov-2/XBB (SARS-CoV-2 (XBB))
- nextstrain/sars-cov-2/BA.2.86 (SARS-CoV-2 (BA.2.86))
- nextstrain/flu/h1n1pdm/ha/CY121680 (Influenza A H1N1pdm HA)
- nextstrain/flu/h1n1pdm/ha/MW626062 (Influenza A H1N1pdm HA)
- nextstrain/flu/h1n1pdm/na/MW626056 (Influenza A H1N1pdm NA)
- nextstrain/flu/h3n2/ha/CY163680 (Influenza A H3N2 HA)
- nextstrain/flu/h3n2/ha/EPI1857216 (Influenza A H3N2 HA)
- nextstrain/flu/h3n2/na/EPI1857215 (Influenza A H3N2 NA)
- nextstrain/flu/vic/ha/KX058884 (Influenza B Victoria HA)
- nextstrain/flu/vic/na/CY073894 (Influenza B Victoria NA)
- nextstrain/flu/yam/ha/JN993010 (Influenza B Yamagata HA)
- nextstrain/rsv/a/EPI_ISL_412866 (RSV-A)
- nextstrain/rsv/b/EPI_ISL_1653999 (RSV-B)
- nextstrain/mpox/all-clades (Mpox virus (All clades))
- nextstrain/mpox/clade-iib (Mpox virus (Clade IIb))
- nextstrain/mpox/lineage-b.1 (Mpox virus (Lineage B.1))
- nextstrain/flu/h3n2/pb1 (Influenza A H3N2 PB1 (segment 2))
- nextstrain/flu/h3n2/np (Influenza A H3N2 NP (segment 5))
- nextstrain/flu/h1n1pdm/pa (Influenza A H1N1pdm PA (segment 3))
- nextstrain/flu/h3n2/ns (Influenza A H3N2 NS (segment 8))
- nextstrain/flu/h1n1pdm/mp (Influenza A H1N1pdm MP (segment 7))
- nextstrain/flu/h1n1pdm/np (Influenza A H1N1pdm NP (segment 5))
- nextstrain/flu/h1n1pdm/ns (Influenza A H1N1pdm NS (segment 8))
- nextstrain/flu/h3n2/mp (Influenza A H3N2 MP (segment 7))
- nextstrain/flu/h3n2/pa (Influenza A H3N2 PA (segment 3))
- nextstrain/flu/h1n1pdm/pb2 (Influenza A H1N1pdm PB2 (segment 1))
- nextstrain/flu/h1n1pdm/pb1 (Influenza A H1N1pdm PB1 (segment 2))
- nextstrain/flu/h3n2/pb2 (Influenza A H3N2 PB2 (segment 1))
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nextstrain-bot committed Jan 16, 2024
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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/ha/CY121680/pathogen.json
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"reference name": "A/California/7/2009-egg"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/ha/MW626062/pathogen.json
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"reference name": "A/Wisconsin/588/2019"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h1n1pdm/mp/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/mp/pathogen.json
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},
"defaultCds": "M2",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/na/MW626056/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/na/MW626056/pathogen.json
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"reference name": "A/Wisconsin/588/2019"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h1n1pdm/np/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/np/pathogen.json
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},
"defaultCds": "NP",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h1n1pdm/ns/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/ns/pathogen.json
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},
"defaultCds": "NS1",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h1n1pdm/pa/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/pa/pathogen.json
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},
"defaultCds": "PA",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h1n1pdm/pb1/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/pb1/pathogen.json
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},
"defaultCds": "PB1",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h1n1pdm/pb2/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h1n1pdm/pb2/pathogen.json
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},
"defaultCds": "PB2",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/ha/CY163680/pathogen.json
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"reference name": "A/Wisconsin/67/2005-egg"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/ha/EPI1857216/pathogen.json
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"reference name": "A/Darwin/6/2021"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h3n2/mp/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/mp/pathogen.json
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},
"defaultCds": "M2",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/na/EPI1857215/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/na/EPI1857215/pathogen.json
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"reference name": "A/Darwin/6/2021"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h3n2/np/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/np/pathogen.json
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},
"defaultCds": "NP",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h3n2/ns/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/ns/pathogen.json
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},
"defaultCds": "NS1",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h3n2/pa/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/pa/pathogen.json
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},
"defaultCds": "PA",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h3n2/pb1/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/pb1/pathogen.json
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},
"defaultCds": "PB1",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
4 changes: 2 additions & 2 deletions data/nextstrain/flu/h3n2/pb2/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
Initial release of for non-HA/NA segments of Influenza A viruses based on genome in RefSeq.
3 changes: 2 additions & 1 deletion data/nextstrain/flu/h3n2/pb2/pathogen.json
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},
"defaultCds": "PB2",
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/vic/ha/KX058884/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

- fix subclade definition of C.2 and C.4

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/vic/ha/KX058884/pathogen.json
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"reference name": "B/Brisbane/60/2008-egg"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/vic/na/CY073894/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/vic/na/CY073894/pathogen.json
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"reference name": "B/Brisbane/60/2008"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/flu/yam/ha/JN993010/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release for Nextclade v3!

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3 changes: 2 additions & 1 deletion data/nextstrain/flu/yam/ha/JN993010/pathogen.json
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"reference name": "B/Wisconsin/01/2010"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/mpox/all-clades/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of this dataset. This dataset is similar to the v2 dataset [`MPXV/ancestral`](https://github.com/nextstrain/nextclade_data/tree/2023-08-17--15-51-24--UTC/data/datasets/MPXV/references/ancestral/versions/2023-08-01T12%3A00%3A00Z/files) with some differences.

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3 changes: 2 additions & 1 deletion data/nextstrain/mpox/all-clades/pathogen.json
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"nextstrain/mpox"
],
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/mpox/clade-iib/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of this dataset. This dataset is similar to the v2 dataset [`hMPXV/NC_063383.1`](https://github.com/nextstrain/nextclade_data/tree/2023-08-17--15-51-24--UTC/data/datasets/hMPXV/references/NC_063383.1/versions/2023-08-01T12%3A00%3A00Z/files) with some differences.

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3 changes: 2 additions & 1 deletion data/nextstrain/mpox/clade-iib/pathogen.json
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"hMPXV"
],
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/mpox/lineage-b.1/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

Initial release of this dataset. This dataset is similar to the v2 dataset [`hMPXV_B.1/pseudo_ON563414`](https://github.com/nextstrain/nextclade_data/tree/2023-08-17--15-51-24--UTC/data/datasets/hMPXV_B.1/references/pseudo_ON563414/versions/2023-08-01T12%3A00%3A00Z/files) with some differences.

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3 changes: 2 additions & 1 deletion data/nextstrain/mpox/lineage-b.1/pathogen.json
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"hMPXV_B1"
],
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

**first release of v3 dataset.**

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3 changes: 2 additions & 1 deletion data/nextstrain/rsv/a/EPI_ISL_412866/pathogen.json
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"reference name": "hRSV/A/England/397/2017"
},
"version": {
"tag": "unreleased"
"updatedAt": "2024-01-16T20:31:02Z",
"tag": "2024-01-16--20-31-02Z"
}
}
2 changes: 1 addition & 1 deletion data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md
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## Unreleased
## 2024-01-16T20:31:02Z

**first release of v3 dataset.**

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