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chore: release 2024-07-03--08-29-55Z
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Updated datasets:

- SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
- SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
- SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
- SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
- SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
- Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
- Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
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nextstrain-bot committed Jul 3, 2024
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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

- add representative samples from early pandemic-era clades including 1, 2, 3, 4, 6C, 7, and 8 to improve clade label annotations for older sequences

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/na/MW626056/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/vic/ha/KX058884/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/XBB/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md
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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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66 changes: 44 additions & 22 deletions data_output/index.json
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Expand All @@ -712,7 +723,8 @@
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Expand All @@ -806,7 +819,8 @@
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},
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}
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},
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"web": "3.0.0-alpha.0"
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},
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Expand All @@ -1274,7 +1295,8 @@
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"tag": "2024-07-03--08-29-55Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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## Unreleased
## 2024-07-03T08:29:55Z

- add representative samples from early pandemic-era clades including 1, 2, 3, 4, 6C, 7, and 8 to improve clade label annotations for older sequences

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"reference name": "A/California/7/2009-egg"
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"tag": "2024-07-03--08-29-55Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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@@ -1,4 +1,4 @@
## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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"reference name": "A/Wisconsin/588/2019"
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"tag": "2024-07-03--08-29-55Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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@@ -1,4 +1,4 @@
## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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"reference name": "A/Wisconsin/588/2019"
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"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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@@ -1,4 +1,4 @@
## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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"tag": "2024-07-03--08-29-55Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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@@ -1,4 +1,4 @@
## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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"reference name": "A/Darwin/6/2021"
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"tag": "2024-07-03--08-29-55Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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@@ -1,4 +1,4 @@
## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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"reference name": "B/Brisbane/60/2008-egg"
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"tag": "2024-07-03--08-29-55Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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@@ -1,4 +1,4 @@
## Unreleased
## 2024-07-03T08:29:55Z

Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.

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},
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"tag": "2024-07-03--08-29-55Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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